1 Response_reg#1
20-120 aa · 101 aa · 40.4% of protein
Raw token
Response_reg:20:9.86e-20:120:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD43_RS09370
Response regulator LytTR family
Bifidobacterium pseudocatenulatum · GCF_003437435
ClassRRTypeLytTRLength250 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003437435#DXD43_RS09370Stable P2CS identifier used across views.
GenomeGCF_003437435Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length250 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage193 / 250 aa (77.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa250 aa
Domain-by-domain annotation2 items
2 LytTR#2
151-242 aa · 92 aa · 36.8% of protein
Raw token
LytTR:151:8.72e-20:242:97:98- Raw architecture: Response_reg:20:9.86e-20:120:106:111#LytTR:151:8.72e-20:242:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003437435::NZ_QSPS01000012.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span31215-31967Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD43_09365RefSeq proteinWP_004220970.1
Context group ID
GCF_003437435::NZ_QSPS01000012.1::G00004Context members
DXD43_RS09370
Partner locus tags
DXD43_RS09370
Partner old locus tags
DXD43_09365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004220970.1Primary protein accession used for annex mappings.
UniProt accessionC0BRD2Primary UniProt accession resolved in the annex database.
UniProt IDC0BRD2_BIFPSDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD43_RS09370Primary locus identifier stored in the genes table.
Old locus tagDXD43_09365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSPS01000012.1Sequence record reported by the local genomic context database.
Genomic interval31 215-31 967 nt753 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span31 215-31 967 ntGCF_003437435::NZ_QSPS01000012.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437435::NZ_QSPS01000012.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSPS01000012.1All displayed genes belong to this local TCS context.
Neighborhood span31 215-31 967 nt753 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 215 nt31 967 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD43_RS09370GCF_003437435#DXD43_RS09370
RRLytTRCurrent focus
31 215-31 967 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173435#BIFPSEUDO_RS03925Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0722021
Simplified PFAM architecture for RROC_0722021
PFAM domain coverage: 192 / 250 aa (76.8%)
1 aa250 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[19-121] | LytTR[154-242]
- Domain count: 2
- Matched identifier: RROC_0722021
- Positioned domains: Response_reg 19-121 ; Response_reg 19-121 ; LytTR 154-242 ; LytTR 154-242
Cluster members and taxonomy
Representative gene: GCF_000173435#BIFPSEUDO_RS03925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_003437435
AssemblyASM343743v1 · Scaffoldhaploid
Genome composition2 294 189 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 28 · HK 11 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key