1 Response_reg#1
11-124 aa · 114 aa · 52.3% of protein
Raw token
Response_reg:11:6.53e-19:124:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD43_RS03055
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_003437435
ClassRRTypeNarLLength218 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003437435#DXD43_RS03055Stable P2CS identifier used across views.
GenomeGCF_003437435Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 218 aa (77.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
155-209 aa · 55 aa · 25.2% of protein
Raw token
HTH_LUXR:155:0.00000000000279:209:55:58- Raw architecture: Response_reg:11:6.53e-19:124:115:111#HTH_LUXR:155:0.00000000000279:209:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003437435::NZ_QSPS01000002.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span164612-165268Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD43_03050RefSeq proteinWP_117675403.1
Context group ID
GCF_003437435::NZ_QSPS01000002.1::G00005Context members
DXD43_RS03055
Partner locus tags
DXD43_RS03055
Partner old locus tags
DXD43_03050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117675403.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD43_RS03055Primary locus identifier stored in the genes table.
Old locus tagDXD43_03050Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSPS01000002.1Sequence record reported by the local genomic context database.
Genomic interval164 612-165 268 nt657 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span164 612-165 268 ntGCF_003437435::NZ_QSPS01000002.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437435::NZ_QSPS01000002.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSPS01000002.1All displayed genes belong to this local TCS context.
Neighborhood span164 612-165 268 nt657 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
164 612 nt165 268 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD43_RS03055GCF_003437435#DXD43_RS03055
RRNarLCurrent focus
164 612-165 268 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437435#DXD43_RS03055The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1819848
Simplified PFAM architecture for RROC_1819848
PFAM domain coverage: 169 / 218 aa (77.5%)
1 aa218 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[11-124] | GerE[155-209]
- Domain count: 2
- Matched identifier: RROC_1819848
- Positioned domains: Response_reg 11-124 ; Response_reg 11-124 ; GerE 155-209 ; GerE 155-209
Cluster members and taxonomy
Representative gene: GCF_003437435#DXD43_RS03055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_003437435
AssemblyASM343743v1 · Scaffoldhaploid
Genome composition2 294 189 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 28 · HK 11 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key