1 Response_reg#1
14-116 aa · 103 aa · 49.3% of protein
Raw token
Response_reg:14:0.000000015:116:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC83_RS06550
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_003436955
ClassRRTypeNarLLength209 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003436955#DXC83_RS06550Stable P2CS identifier used across views.
GenomeGCF_003436955Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length209 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage141 / 209 aa (67.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa209 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
169-206 aa · 38 aa · 18.2% of protein
Raw token
HTH_LUXR:169:0.0000000946:206:38:58- Raw architecture: Response_reg:14:0.000000015:116:103:111#HTH_LUXR:169:0.0000000946:206:38:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003436955::NZ_QSRI01000002.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span410286-410915Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC83_06540RefSeq proteinWP_117662863.1
Context group ID
GCF_003436955::NZ_QSRI01000002.1::G00015Context members
DXC83_RS06550
Partner locus tags
DXC83_RS06550
Partner old locus tags
DXC83_06540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117662863.1Primary protein accession used for annex mappings.
UniProt accessionA0A413KCV1Primary UniProt accession resolved in the annex database.
UniProt IDA0A413KCV1_BIFPSDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC83_RS06550Primary locus identifier stored in the genes table.
Old locus tagDXC83_06540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRI01000002.1Sequence record reported by the local genomic context database.
Genomic interval410 286-410 915 nt630 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span410 286-410 915 ntGCF_003436955::NZ_QSRI01000002.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436955::NZ_QSRI01000002.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRI01000002.1All displayed genes belong to this local TCS context.
Neighborhood span410 286-410 915 nt630 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
410 286 nt410 915 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXC83_RS06550GCF_003436955#DXC83_RS06550
RRNarLCurrent focus
410 286-410 915 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436955#DXC83_RS06550The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2045217
Simplified PFAM architecture for RROC_2045217
PFAM domain coverage: 143 / 209 aa (68.4%)
1 aa209 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[14-118] | GerE[168-205]
- Domain count: 2
- Matched identifier: RROC_2045217
- Positioned domains: Response_reg 14-118 ; Response_reg 14-118 ; GerE 168-205 ; GerE 168-205
Cluster members and taxonomy
Representative gene: GCF_003436955#DXC83_RS06550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_003436955
AssemblyASM343695v1 · Scaffoldhaploid
Genome composition2 261 675 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 30 · HK 11 · RR 17CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key