1 HAMP#1
144-211 aa · 68 aa · 15.5% of protein
Raw token
HAMP:144:0.000000402:211:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD36_RS16205
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_003436535
ClassHKTypeClassicLength439 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436535#DXD36_RS16205Stable P2CS identifier used across views.
GenomeGCF_003436535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length439 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage211 / 439 aa (48.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa439 aa
Domain-by-domain annotation3 items
2 HisKA#2
232-296 aa · 65 aa · 14.8% of protein
Raw token
HisKA:232:0.00000519:296:65:643 HATPase_c#3
342-419 aa · 78 aa · 17.8% of protein
Raw token
HATPase_c:342:0.00000559:419:90:109- Raw architecture: HAMP:144:0.000000402:211:68:69#HisKA:232:0.00000519:296:65:64#HATPase_c:342:0.00000559:419:90:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436535::NZ_QSPZ01000052.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5805-7774Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD36_16205RefSeq proteinWP_117636853.1
Context group ID
GCF_003436535::NZ_QSPZ01000052.1::G00038Context members
DXD36_RS16200DXD36_RS16205
Partner locus tags
DXD36_RS16200DXD36_RS16205
Partner old locus tags
DXD36_16200DXD36_16205
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117636853.1Primary protein accession used for annex mappings.
UniProt accessionA0A396G3Y8Primary UniProt accession resolved in the annex database.
UniProt IDA0A396G3Y8_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD36_RS16205Primary locus identifier stored in the genes table.
Old locus tagDXD36_16205Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSPZ01000052.1Sequence record reported by the local genomic context database.
Genomic interval6 455-7 774 nt1 320 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 805-7 774 ntGCF_003436535::NZ_QSPZ01000052.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436535::NZ_QSPZ01000052.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSPZ01000052.1All displayed genes belong to this local TCS context.
Neighborhood span5 805-7 774 nt1 970 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 805 nt7 774 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD36_RS16200GCF_003436535#DXD36_RS16200
RROmpR
5 805-6 458 nt · Forward (+)
DXD36_RS16205GCF_003436535#DXD36_RS16205
HKClassicCurrent focus
6 455-7 774 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436535#DXD36_RS16205The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2084667
Simplified PFAM architecture for HKOC_2084667
PFAM domain coverage: 143 / 439 aa (32.6%)
1 aa439 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[233-296] | HATPase_c[342-420]
- Domain count: 2
- Matched identifier: HKOC_2084667
- Positioned domains: HisKA 233-296 ; HATPase_c 342-420
Cluster members and taxonomy
Representative gene: GCF_003436535#DXD36_RS16205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003436535
AssemblyASM343653v1 · Scaffoldhaploid
Genome composition3 396 357 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 81 · HK 38 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key