1 Response_reg#1
4-119 aa · 116 aa · 48.1% of protein
Raw token
Response_reg:4:0.000000000000215:119:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD67_RS00580
Response regulator LytTR family
Coprococcus comes · GCF_003436145
ClassRRTypeLytTRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003436145#DXD67_RS00580Stable P2CS identifier used across views.
GenomeGCF_003436145Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage205 / 241 aa (85.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 LytTR#2
142-230 aa · 89 aa · 36.9% of protein
Raw token
LytTR:142:0.000000000000582:230:94:98- Raw architecture: Response_reg:4:0.000000000000215:119:118:111#LytTR:142:0.000000000000582:230:94:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003436145::NZ_QSOV01000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span128579-129304Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD67_00580RefSeq proteinWP_109273677.1
Context group ID
GCF_003436145::NZ_QSOV01000001.1::G00004Context members
DXD67_RS00580
Partner locus tags
DXD67_RS00580
Partner old locus tags
DXD67_00580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_109273677.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4GTM8Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4GTM8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD67_RS00580Primary locus identifier stored in the genes table.
Old locus tagDXD67_00580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOV01000001.1Sequence record reported by the local genomic context database.
Genomic interval128 579-129 304 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span128 579-129 304 ntGCF_003436145::NZ_QSOV01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436145::NZ_QSOV01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOV01000001.1All displayed genes belong to this local TCS context.
Neighborhood span128 579-129 304 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
128 579 nt129 304 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD67_RS00580GCF_003436145#DXD67_RS00580
RRLytTRCurrent focus
128 579-129 304 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436145#DXD67_RS00580The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0867687
Simplified PFAM architecture for RROC_0867687
PFAM domain coverage: 203 / 241 aa (84.2%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-118] | LytTR[142-229]
- Domain count: 2
- Matched identifier: RROC_0867687
- Positioned domains: Response_reg 4-118 ; Response_reg 4-118 ; LytTR 142-229 ; LytTR 142-229
Cluster members and taxonomy
Representative gene: GCF_003436145#DXD67_RS00580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_003436145
AssemblyASM343614v1 · Scaffoldhaploid
Genome composition3 346 232 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 75 · HK 38 · RR 36CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key