1 Response_reg#1
3-119 aa · 117 aa · 34.2% of protein
Raw token
Response_reg:3:1.85e-29:119:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD95_RS11250
Response regulator, unclassified
Agathobacter rectalis · GCF_003436035
ClassRRTypeunclassifiedLength342 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436035#DXD95_RS11250Stable P2CS identifier used across views.
GenomeGCF_003436035Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length342 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 342 aa (55.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa342 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
249-285 aa · 37 aa · 10.8% of protein
Raw token
HTH_AraC:249:0.00000000105:285:37:423 HTH_AraC#3
302-337 aa · 36 aa · 10.5% of protein
Raw token
HTH_AraC:302:0.00000535:337:36:42- Raw architecture: Response_reg:3:1.85e-29:119:117:111#HTH_AraC:249:0.00000000105:285:37:42#HTH_AraC:302:0.00000535:337:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436035::NZ_QSOB01000016.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42595-45511Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD95_11250RefSeq proteinWP_117482812.1
Context group ID
GCF_003436035::NZ_QSOB01000016.1::G00011Context members
DXD95_RS11245DXD95_RS11250
Partner locus tags
DXD95_RS11245DXD95_RS11250
Partner old locus tags
DXD95_11245DXD95_11250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117482812.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4E829Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4E829_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD95_RS11250Primary locus identifier stored in the genes table.
Old locus tagDXD95_11250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOB01000016.1Sequence record reported by the local genomic context database.
Genomic interval44 483-45 511 nt1 029 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span42 595-45 511 ntGCF_003436035::NZ_QSOB01000016.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436035::NZ_QSOB01000016.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOB01000016.1All displayed genes belong to this local TCS context.
Neighborhood span42 595-45 511 nt2 917 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 595 nt45 511 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD95_RS11245GCF_003436035#DXD95_RS11245
HKClassic
42 595-44 505 nt · Forward (+)
DXD95_RS11250GCF_003436035#DXD95_RS11250
RRunclassifiedCurrent focus
44 483-45 511 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436035#DXD95_RS11250The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0497699
Simplified PFAM architecture for RROC_0497699
PFAM domain coverage: 181 / 342 aa (52.9%)
1 aa342 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-105] | HTH_18[260-337]
- Domain count: 2
- Matched identifier: RROC_0497699
- Positioned domains: Response_reg 3-105 ; Response_reg 3-105 ; HTH_18 260-337 ; HTH_18 260-337
Cluster members and taxonomy
Representative gene: GCF_003436035#DXD95_RS11250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003436035
AssemblyASM343603v1 · Scaffoldhaploid
Genome composition2 945 641 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 62 · HK 28 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key