1 dCache_1#1
82-277 aa · 196 aa · 32.8% of protein
Raw token
dCache_1:82:0.00000000000947:277:204:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD95_RS02405
Histidine kinase, Classic
Agathobacter rectalis · GCF_003436035
ClassHKTypeClassicLength597 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436035#DXD95_RS02405Stable P2CS identifier used across views.
GenomeGCF_003436035Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
dCache_1His_kinaseHATPase_c
Protein length597 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage383 / 597 aa (64.2%)Merged over positioned domains only.
Domain description1 dCache_1,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa597 aa
Domain-by-domain annotation3 items
2 His_kinase#2
379-458 aa · 80 aa · 13.4% of protein
Raw token
His_kinase:379:1.8e-34:458:80:803 HATPase_c#3
473-579 aa · 107 aa · 17.9% of protein
Raw token
HATPase_c:473:1.36e-16:579:110:109- Raw architecture: dCache_1:82:0.00000000000947:277:204:195#His_kinase:379:1.8e-34:458:80:80#HATPase_c:473:1.36e-16:579:110:109
- Domain description: 1 dCache_1,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436035::NZ_QSOB01000003.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6146-9524Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD95_02405RefSeq proteinWP_117481483.1
Context group ID
GCF_003436035::NZ_QSOB01000003.1::G00015Context members
DXD95_RS02400DXD95_RS02405
Partner locus tags
DXD95_RS02400DXD95_RS02405
Partner old locus tags
DXD95_02400DXD95_02405
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117481483.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4EFQ7Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4EFQ7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD95_RS02405Primary locus identifier stored in the genes table.
Old locus tagDXD95_02405Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOB01000003.1Sequence record reported by the local genomic context database.
Genomic interval7 731-9 524 nt1 794 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 146-9 524 ntGCF_003436035::NZ_QSOB01000003.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436035::NZ_QSOB01000003.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOB01000003.1All displayed genes belong to this local TCS context.
Neighborhood span6 146-9 524 nt3 379 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 146 nt9 524 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD95_RS02400GCF_003436035#DXD95_RS02400
RRunclassified
6 146-7 750 nt · Forward (+)
DXD95_RS02405GCF_003436035#DXD95_RS02405
HKClassicCurrent focus
7 731-9 524 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436035#DXD95_RS02405The current gene is the representative for this cluster.
PFAM architecturedCache_1 + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1069823
Simplified PFAM architecture for HKOC_1069823
PFAM domain coverage: 421 / 597 aa (70.5%)
1 aa597 aa
dCache_1His_kinaseHATPase_c
- Simplified architecture: dCache_1 + His_kinase + HATPase_c
- Raw architecture: dCache_1[41-277] | His_kinase[380-458] | HATPase_c[475-579]
- Domain count: 3
- Matched identifier: HKOC_1069823
- Positioned domains: dCache_1 41-277 ; His_kinase 380-458 ; HATPase_c 475-579
Cluster members and taxonomy
Representative gene: GCF_003436035#DXD95_RS02405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003436035
AssemblyASM343603v1 · Scaffoldhaploid
Genome composition2 945 641 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 62 · HK 28 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key