1 HAMP#1
319-388 aa · 70 aa · 11.0% of protein
Raw token
HAMP:319:0.000000253:388:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD95_RS11245
Histidine kinase, Classic
Agathobacter rectalis · GCF_003436035
ClassHKTypeClassicLength636 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436035#DXD95_RS11245Stable P2CS identifier used across views.
GenomeGCF_003436035Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length636 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage262 / 636 aa (41.2%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa636 aa
Domain-by-domain annotation3 items
2 His_kinase#2
404-479 aa · 76 aa · 11.9% of protein
Raw token
His_kinase:404:1e-27:479:76:803 HATPase_c#3
493-608 aa · 116 aa · 18.2% of protein
Raw token
HATPase_c:493:8.49e-17:608:116:109- Raw architecture: HAMP:319:0.000000253:388:70:69#His_kinase:404:1e-27:479:76:80#HATPase_c:493:8.49e-17:608:116:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436035::NZ_QSOB01000016.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42595-45511Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD95_11245RefSeq proteinWP_147324567.1
Context group ID
GCF_003436035::NZ_QSOB01000016.1::G00011Context members
DXD95_RS11245DXD95_RS11250
Partner locus tags
DXD95_RS11245DXD95_RS11250
Partner old locus tags
DXD95_11245DXD95_11250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_147324567.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD95_RS11245Primary locus identifier stored in the genes table.
Old locus tagDXD95_11245Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOB01000016.1Sequence record reported by the local genomic context database.
Genomic interval42 595-44 505 nt1 911 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span42 595-45 511 ntGCF_003436035::NZ_QSOB01000016.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436035::NZ_QSOB01000016.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOB01000016.1All displayed genes belong to this local TCS context.
Neighborhood span42 595-45 511 nt2 917 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 595 nt45 511 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD95_RS11245GCF_003436035#DXD95_RS11245
HKClassicCurrent focus
42 595-44 505 nt · Forward (+)
DXD95_RS11250GCF_003436035#DXD95_RS11250
RRunclassified
44 483-45 511 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436035#DXD95_RS11245The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0931451
Simplified PFAM architecture for HKOC_0931451
PFAM domain coverage: 191 / 636 aa (30.0%)
1 aa636 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[404-479] | HATPase_c[493-607]
- Domain count: 2
- Matched identifier: HKOC_0931451
- Positioned domains: His_kinase 404-479 ; HATPase_c 493-607
Cluster members and taxonomy
Representative gene: GCF_003436035#DXD95_RS11245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003436035
AssemblyASM343603v1 · Scaffoldhaploid
Genome composition2 945 641 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 62 · HK 28 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key