1 Response_reg#1
4-113 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:4:6.98e-38:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD95_RS08540
Response regulator OmpR family
Agathobacter rectalis · GCF_003436035
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436035#DXD95_RS08540Stable P2CS identifier used across views.
GenomeGCF_003436035Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 226 aa (82.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 33.6% of protein
Raw token
Trans_reg_C:145:7.05e-23:220:78:77- Raw architecture: Response_reg:4:6.98e-38:113:110:111#Trans_reg_C:145:7.05e-23:220:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436035::NZ_QSOB01000010.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span102964-104798Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD95_08540RefSeq proteinWP_022292389.1
Context group ID
GCF_003436035::NZ_QSOB01000010.1::G00004Context members
DXD95_RS08535DXD95_RS08540
Partner locus tags
DXD95_RS08535DXD95_RS08540
Partner old locus tags
DXD95_08535DXD95_08540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022292389.1Primary protein accession used for annex mappings.
UniProt accessionA0A173S6C3Primary UniProt accession resolved in the annex database.
UniProt IDA0A173S6C3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD95_RS08540Primary locus identifier stored in the genes table.
Old locus tagDXD95_08540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOB01000010.1Sequence record reported by the local genomic context database.
Genomic interval104 118-104 798 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span102 964-104 798 ntGCF_003436035::NZ_QSOB01000010.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436035::NZ_QSOB01000010.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOB01000010.1All displayed genes belong to this local TCS context.
Neighborhood span102 964-104 798 nt1 835 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
102 964 nt104 798 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD95_RS08535GCF_003436035#DXD95_RS08535
HKClassic
102 964-104 121 nt · Reverse (-)
DXD95_RS08540GCF_003436035#DXD95_RS08540
RROmpRCurrent focus
104 118-104 798 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209955#ERE_RS15430Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1408924
Simplified PFAM architecture for RROC_1408924
PFAM domain coverage: 185 / 226 aa (81.9%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[145-219]
- Domain count: 2
- Matched identifier: RROC_1408924
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 145-219 ; Trans_reg_C 145-219
Cluster members and taxonomy
Representative gene: GCF_000209955#ERE_RS15430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003436035
AssemblyASM343603v1 · Scaffoldhaploid
Genome composition2 945 641 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 62 · HK 28 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key