1 Response_reg#1
3-112 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:3:1.02e-34:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD95_RS07320
Response regulator OmpR family
Agathobacter rectalis · GCF_003436035
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436035#DXD95_RS07320Stable P2CS identifier used across views.
GenomeGCF_003436035Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 230 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:150:1.53e-30:226:77:77- Raw architecture: Response_reg:3:1.02e-34:112:111:111#Trans_reg_C:150:1.53e-30:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436035::NZ_QSOB01000009.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8857-10919Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD95_07320RefSeq proteinWP_012740951.1
Context group ID
GCF_003436035::NZ_QSOB01000009.1::G00035Context members
DXD95_RS07320DXD95_RS07325
Partner locus tags
DXD95_RS07320DXD95_RS07325
Partner old locus tags
DXD95_07320DXD95_07325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012740951.1Primary protein accession used for annex mappings.
UniProt accessionC4Z9H9Primary UniProt accession resolved in the annex database.
UniProt IDC4Z9H9_AGARVDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD95_RS07320Primary locus identifier stored in the genes table.
Old locus tagDXD95_07320Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOB01000009.1Sequence record reported by the local genomic context database.
Genomic interval8 857-9 549 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 857-10 919 ntGCF_003436035::NZ_QSOB01000009.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436035::NZ_QSOB01000009.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOB01000009.1All displayed genes belong to this local TCS context.
Neighborhood span8 857-10 919 nt2 063 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 857 nt10 919 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD95_RS07320GCF_003436035#DXD95_RS07320
RROmpRCurrent focus
8 857-9 549 nt · Forward (+)
DXD95_RS07325GCF_003436035#DXD95_RS07325
HKClassic
9 546-10 919 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS00110Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1199873
Simplified PFAM architecture for RROC_1199873
PFAM domain coverage: 186 / 230 aa (80.9%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[150-225]
- Domain count: 2
- Matched identifier: RROC_1199873
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 150-225 ; Trans_reg_C 150-225
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS00110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003436035
AssemblyASM343603v1 · Scaffoldhaploid
Genome composition2 945 641 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 62 · HK 28 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key