1 HisKA#1
198-263 aa · 66 aa · 15.4% of protein
Raw token
HisKA:198:0.00000000000626:263:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD95_RS06115
Histidine kinase, Classic
Agathobacter rectalis · GCF_003436035
ClassHKTypeClassicLength428 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436035#DXD95_RS06115Stable P2CS identifier used across views.
GenomeGCF_003436035Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length428 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 428 aa (40.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa428 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
318-426 aa · 109 aa · 25.5% of protein
Raw token
HATPase_c:318:0.00000000000000208:426:110:109- Raw architecture: HisKA:198:0.00000000000626:263:66:64#HATPase_c:318:0.00000000000000208:426:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436035::NZ_QSOB01000007.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span39682-41678Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD95_06115RefSeq proteinWP_117482278.1
Context group ID
GCF_003436035::NZ_QSOB01000007.1::G00033Context members
DXD95_RS06110DXD95_RS06115
Partner locus tags
DXD95_RS06110DXD95_RS06115
Partner old locus tags
DXD95_06110DXD95_06115
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117482278.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4EES8Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4EES8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD95_RS06115Primary locus identifier stored in the genes table.
Old locus tagDXD95_06115Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOB01000007.1Sequence record reported by the local genomic context database.
Genomic interval40 392-41 678 nt1 287 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span39 682-41 678 ntGCF_003436035::NZ_QSOB01000007.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436035::NZ_QSOB01000007.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOB01000007.1All displayed genes belong to this local TCS context.
Neighborhood span39 682-41 678 nt1 997 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 682 nt41 678 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD95_RS06110GCF_003436035#DXD95_RS06110
RROmpR
39 682-40 353 nt · Forward (+)
DXD95_RS06115GCF_003436035#DXD95_RS06115
HKClassicCurrent focus
40 392-41 678 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436035#DXD95_RS06115The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2191283
Simplified PFAM architecture for HKOC_2191283
PFAM domain coverage: 174 / 428 aa (40.7%)
1 aa428 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[199-263] | HATPase_c[318-426]
- Domain count: 2
- Matched identifier: HKOC_2191283
- Positioned domains: HisKA 199-263 ; HATPase_c 318-426
Cluster members and taxonomy
Representative gene: GCF_003436035#DXD95_RS06115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003436035
AssemblyASM343603v1 · Scaffoldhaploid
Genome composition2 945 641 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 62 · HK 28 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key