1 CheW#1
15-149 aa · 135 aa · 45.2% of protein
Raw token
CheW:15:7.93e-33:149:138:138P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD95_RS04835
Response regulator CheV family
Agathobacter rectalis · GCF_003436035
ClassRRTypeCheVLength299 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003436035#DXD95_RS04835Stable P2CS identifier used across views.
GenomeGCF_003436035Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
CheWResponse_reg
Protein length299 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage256 / 299 aa (85.6%)Merged over positioned domains only.
Domain description1 CheW,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa299 aa
Domain-by-domain annotation2 items
2 Response_reg#2
173-293 aa · 121 aa · 40.5% of protein
Raw token
Response_reg:173:1.67e-21:293:124:111- Raw architecture: CheW:15:7.93e-33:149:138:138#Response_reg:173:1.67e-21:293:124:111
- Domain description: 1 CheW,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003436035::NZ_QSOB01000005.1::G00025
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span75982-76881Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD95_04835RefSeq proteinWP_117482053.1
Context group ID
GCF_003436035::NZ_QSOB01000005.1::G00025Context members
DXD95_RS04835
Partner locus tags
DXD95_RS04835
Partner old locus tags
DXD95_04835
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117482053.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4EEP6Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4EEP6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD95_RS04835Primary locus identifier stored in the genes table.
Old locus tagDXD95_04835Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOB01000005.1Sequence record reported by the local genomic context database.
Genomic interval75 982-76 881 nt900 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span75 982-76 881 ntGCF_003436035::NZ_QSOB01000005.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436035::NZ_QSOB01000005.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOB01000005.1All displayed genes belong to this local TCS context.
Neighborhood span75 982-76 881 nt900 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 982 nt76 881 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD95_RS04835GCF_003436035#DXD95_RS04835
RRCheVCurrent focus
75 982-76 881 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436035#DXD95_RS04835The current gene is the representative for this cluster.
PFAM architectureCheW + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0575053
Simplified PFAM architecture for RROC_0575053
PFAM domain coverage: 254 / 299 aa (84.9%)
1 aa299 aa
CheWResponse_reg
- Simplified architecture: CheW + Response_reg
- Raw architecture: CheW[15-148] | Response_reg[173-292]
- Domain count: 2
- Matched identifier: RROC_0575053
- Positioned domains: CheW 15-148 ; CheW 15-148 ; Response_reg 173-292 ; Response_reg 173-292
Cluster members and taxonomy
Representative gene: GCF_003436035#DXD95_RS04835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003436035
AssemblyASM343603v1 · Scaffoldhaploid
Genome composition2 945 641 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 62 · HK 28 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key