1 sCache_like#1
54-126 aa · 73 aa · 16.6% of protein
Raw token
sCache_like:54:0.000001:126:74:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD95_RS03905
Histidine kinase, Classic
Agathobacter rectalis · GCF_003436035
ClassHKTypeClassicLength440 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436035#DXD95_RS03905Stable P2CS identifier used across views.
GenomeGCF_003436035Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length440 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 440 aa (56.4%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa440 aa
Domain-by-domain annotation3 items
2 HisKA#2
222-287 aa · 66 aa · 15.0% of protein
Raw token
HisKA:222:6.4e-18:287:66:643 HATPase_c#3
332-440 aa · 109 aa · 24.8% of protein
Raw token
HATPase_c:332:1.27e-31:440:109:109- Raw architecture: sCache_like:54:0.000001:126:74:114#HisKA:222:6.4e-18:287:66:64#HATPase_c:332:1.27e-31:440:109:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436035::NZ_QSOB01000004.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span99661-101697Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD95_03905RefSeq proteinWP_117481825.1
Context group ID
GCF_003436035::NZ_QSOB01000004.1::G00023Context members
DXD95_RS03905DXD95_RS03910
Partner locus tags
DXD95_RS03905DXD95_RS03910
Partner old locus tags
DXD95_03905DXD95_03910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117481825.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4EF55Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4EF55_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD95_RS03905Primary locus identifier stored in the genes table.
Old locus tagDXD95_03905Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOB01000004.1Sequence record reported by the local genomic context database.
Genomic interval99 661-100 983 nt1 323 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span99 661-101 697 ntGCF_003436035::NZ_QSOB01000004.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436035::NZ_QSOB01000004.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOB01000004.1All displayed genes belong to this local TCS context.
Neighborhood span99 661-101 697 nt2 037 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
99 661 nt101 697 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD95_RS03905GCF_003436035#DXD95_RS03905
HKClassicCurrent focus
99 661-100 983 nt · Reverse (-)
DXD95_RS03910GCF_003436035#DXD95_RS03910
RROmpR
101 029-101 697 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436035#DXD95_RS03905The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2074107
Simplified PFAM architecture for HKOC_2074107
PFAM domain coverage: 172 / 440 aa (39.1%)
1 aa440 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[223-287] | HATPase_c[333-439]
- Domain count: 2
- Matched identifier: HKOC_2074107
- Positioned domains: HisKA 223-287 ; HATPase_c 333-439
Cluster members and taxonomy
Representative gene: GCF_003436035#DXD95_RS03905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003436035
AssemblyASM343603v1 · Scaffoldhaploid
Genome composition2 945 641 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 62 · HK 28 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key