1 Response_reg#1
13-122 aa · 110 aa · 45.1% of protein
Raw token
Response_reg:13:5.44e-37:122:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD87_RS06460
Response regulator OmpR family
Bifidobacterium pseudocatenulatum · GCF_003436025
ClassRRTypeOmpRLength244 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436025#DXD87_RS06460Stable P2CS identifier used across views.
GenomeGCF_003436025Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 244 aa (76.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
163-239 aa · 77 aa · 31.6% of protein
Raw token
Trans_reg_C:163:2.57e-33:239:77:77- Raw architecture: Response_reg:13:5.44e-37:122:111:111#Trans_reg_C:163:2.57e-33:239:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436025::NZ_QSOG01000003.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42941-45359Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD87_06455RefSeq proteinWP_181971542.1
Context group ID
GCF_003436025::NZ_QSOG01000003.1::G00014Context members
DXD87_RS06455DXD87_RS06460
Partner locus tags
DXD87_RS06455DXD87_RS06460
Partner old locus tags
DXD87_06450DXD87_06455
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_181971542.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD87_RS06460Primary locus identifier stored in the genes table.
Old locus tagDXD87_06455Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOG01000003.1Sequence record reported by the local genomic context database.
Genomic interval44 625-45 359 nt735 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span42 941-45 359 ntGCF_003436025::NZ_QSOG01000003.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436025::NZ_QSOG01000003.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOG01000003.1All displayed genes belong to this local TCS context.
Neighborhood span42 941-45 359 nt2 419 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 941 nt45 359 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD87_RS06455GCF_003436025#DXD87_RS06455
HKClassic
42 941-44 611 nt · Reverse (-)
DXD87_RS06460GCF_003436025#DXD87_RS06460
RROmpRCurrent focus
44 625-45 359 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436025#DXD87_RS06460The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0810598
Simplified PFAM architecture for RROC_0810598
PFAM domain coverage: 185 / 244 aa (75.8%)
1 aa244 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[13-122] | Trans_reg_C[165-239]
- Domain count: 2
- Matched identifier: RROC_0810598
- Positioned domains: Response_reg 13-122 ; Response_reg 13-122 ; Trans_reg_C 165-239 ; Trans_reg_C 165-239
Cluster members and taxonomy
Representative gene: GCF_003436025#DXD87_RS06460
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_003436025
AssemblyASM343602v1 · Scaffoldhaploid
Genome composition2 225 345 bp · 56,0% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 28 · HK 11 · RR 16CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key