1 HAMP#1
56-127 aa · 72 aa · 20.1% of protein
Raw token
HAMP:56:5.83e-18:127:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD87_RS03180
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_003436025
ClassHKTypeClassicLength358 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436025#DXD87_RS03180Stable P2CS identifier used across views.
GenomeGCF_003436025Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length358 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 358 aa (69.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa358 aa
Domain-by-domain annotation3 items
2 HisKA#2
131-195 aa · 65 aa · 18.2% of protein
Raw token
HisKA:131:0.00000000000000282:195:65:643 HATPase_c#3
240-350 aa · 111 aa · 31.0% of protein
Raw token
HATPase_c:240:1.71e-22:350:112:109- Raw architecture: HAMP:56:5.83e-18:127:72:69#HisKA:131:0.00000000000000282:195:65:64#HATPase_c:240:1.71e-22:350:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436025::NZ_QSOG01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span749125-750949Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD87_03175RefSeq proteinWP_033524001.1
Context group ID
GCF_003436025::NZ_QSOG01000001.1::G00005Context members
DXD87_RS03175DXD87_RS03180
Partner locus tags
DXD87_RS03175DXD87_RS03180
Partner old locus tags
DXD87_03170DXD87_03175
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033524001.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E5HNR0Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E5HNR0_BIFPSDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD87_RS03180Primary locus identifier stored in the genes table.
Old locus tagDXD87_03175Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOG01000001.1Sequence record reported by the local genomic context database.
Genomic interval749 873-750 949 nt1 077 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span749 125-750 949 ntGCF_003436025::NZ_QSOG01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436025::NZ_QSOG01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOG01000001.1All displayed genes belong to this local TCS context.
Neighborhood span749 125-750 949 nt1 825 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
749 125 nt750 949 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD87_RS03175GCF_003436025#DXD87_RS03175
RROmpR
749 125-749 853 nt · Forward (+)
DXD87_RS03180GCF_003436025#DXD87_RS03180
HKClassicCurrent focus
749 873-750 949 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173435#BIFPSEUDO_RS05080Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2758950
Simplified PFAM architecture for HKOC_2758950
PFAM domain coverage: 231 / 358 aa (64.5%)
1 aa358 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[73-126] | HisKA[131-195] | HATPase_c[240-351]
- Domain count: 3
- Matched identifier: HKOC_2758950
- Positioned domains: HAMP 73-126 ; HisKA 131-195 ; HATPase_c 240-351
Cluster members and taxonomy
Representative gene: GCF_000173435#BIFPSEUDO_RS05080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_003436025
AssemblyASM343602v1 · Scaffoldhaploid
Genome composition2 225 345 bp · 56,0% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 28 · HK 11 · RR 16CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key