1 HisKA#1
355-419 aa · 65 aa · 11.1% of protein
Raw token
HisKA:355:0.000000000000203:419:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW642_RS12365
Histidine kinase, Classic
Blautia sp. AM23-13AC · GCF_003435675
ClassHKTypeClassicLength586 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435675#DW642_RS12365Stable P2CS identifier used across views.
GenomeGCF_003435675Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length586 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 586 aa (29.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa586 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
465-573 aa · 109 aa · 18.6% of protein
Raw token
HATPase_c:465:0.00000000000274:573:114:109- Raw architecture: HisKA:355:0.000000000000203:419:65:64#HATPase_c:465:0.00000000000274:573:114:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435675::NZ_QTUL01000012.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span33377-35816Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW642_12340RefSeq proteinWP_117510364.1
Context group ID
GCF_003435675::NZ_QTUL01000012.1::G00009Context members
DW642_RS12365DW642_RS12370
Partner locus tags
DW642_RS12365DW642_RS12370
Partner old locus tags
DW642_12340DW642_12345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117510364.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW642_RS12365Primary locus identifier stored in the genes table.
Old locus tagDW642_12340Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTUL01000012.1Sequence record reported by the local genomic context database.
Genomic interval33 377-35 137 nt1 761 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span33 377-35 816 ntGCF_003435675::NZ_QTUL01000012.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435675::NZ_QTUL01000012.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTUL01000012.1All displayed genes belong to this local TCS context.
Neighborhood span33 377-35 816 nt2 440 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 377 nt35 816 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW642_RS12365GCF_003435675#DW642_RS12365
HKClassicCurrent focus
33 377-35 137 nt · Reverse (-)
DW642_RS12370GCF_003435675#DW642_RS12370
RROmpR
35 103-35 816 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435675#DW642_RS12365The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1132393
Simplified PFAM architecture for HKOC_1132393
PFAM domain coverage: 171 / 586 aa (29.2%)
1 aa586 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[356-419] | HATPase_c[465-571]
- Domain count: 2
- Matched identifier: HKOC_1132393
- Positioned domains: HisKA 356-419 ; HATPase_c 465-571
Cluster members and taxonomy
Representative gene: GCF_003435675#DW642_RS12365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 971 · GCF_003435675
AssemblyASM343567v1 · Scaffoldhaploid
Genome composition3 443 045 bp · 47,5% GCBlautia sp. AM23-13AC
Signal transduction countsGenes 102 · HK 54 · RR 46CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key