1 HAMP#1
3-71 aa · 69 aa · 24.0% of protein
Raw token
HAMP:3:0.00000000604:71:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA87_RS17870
Histidine kinase, Classic
Desulfotomaculum sp. OF05-3 · GCF_003435535
ClassHKTypeClassicLength288 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435535#DXA87_RS17870Stable P2CS identifier used across views.
GenomeGCF_003435535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Desulfotomaculaceae; Desulfotomaculum
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length288 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 288 aa (82.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa288 aa
Domain-by-domain annotation3 items
2 HisKA#2
75-138 aa · 64 aa · 22.2% of protein
Raw token
HisKA:75:0.0000000000000917:138:64:643 HATPase_c#3
182-286 aa · 105 aa · 36.5% of protein
Raw token
HATPase_c:182:2.65e-21:286:109:109- Raw architecture: HAMP:3:0.00000000604:71:70:69#HisKA:75:0.0000000000000917:138:64:64#HATPase_c:182:2.65e-21:286:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435535::NZ_QWGO01000002.1::G00014
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span120208-121074Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_003435535::NZ_QWGO01000002.1::G00014Context members
DXA87_RS17870
Partner locus tags
DXA87_RS17870
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_158552995.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA87_RS17870Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_QWGO01000002.1Sequence record reported by the local genomic context database.
Genomic interval120 208-121 074 nt867 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span120 208-121 074 ntGCF_003435535::NZ_QWGO01000002.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435535::NZ_QWGO01000002.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGO01000002.1All displayed genes belong to this local TCS context.
Neighborhood span120 208-121 074 nt867 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
120 208 nt121 074 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA87_RS17870GCF_003435535#DXA87_RS17870
HKClassicCurrent focus
120 208-121 074 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435535#DXA87_RS17870The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2897532
Simplified PFAM architecture for HKOC_2897532
PFAM domain coverage: 167 / 288 aa (58.0%)
1 aa288 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[76-138] | HATPase_c[183-286]
- Domain count: 2
- Matched identifier: HKOC_2897532
- Positioned domains: HisKA 76-138 ; HATPase_c 183-286
Cluster members and taxonomy
Representative gene: GCF_003435535#DXA87_RS17870
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 243 · GCF_003435535
AssemblyASM343553v1 · Scaffoldhaploid
Genome composition3 720 446 bp · 48,0% GCDesulfotomaculum sp. OF05-3
Signal transduction countsGenes 66 · HK 31 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyDesulfotomaculaceaeGenusDesulfotomaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Desulfotomaculaceae7Desulfotomaculum
Related genes
Preview from the same derived genome key