1 Response_reg#1
10-107 aa · 98 aa · 27.1% of protein
Raw token
Response_reg:10:3.73e-20:107:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA87_RS17335
Response regulator, CheB family
Desulfotomaculum sp. OF05-3 · GCF_003435535
ClassRRTypeCheBLength362 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435535#DXA87_RS17335Stable P2CS identifier used across views.
GenomeGCF_003435535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Desulfotomaculaceae; Desulfotomaculum
Domain signature
Compact overview inferred from the domain field
Response_regCheB_methylest
Protein length362 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage277 / 362 aa (76.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 CheB_methylestSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa362 aa
Domain-by-domain annotation2 items
2 CheB_methylest#2
177-355 aa · 179 aa · 49.4% of protein
Raw token
CheB_methylest:177:1.81e-79:355:180:177- Raw architecture: Response_reg:10:3.73e-20:107:102:111#CheB_methylest:177:1.81e-79:355:180:177
- Domain description: 1 Response_reg,1 CheB_methylest
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435535::NZ_QWGO01000064.1::G00033
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span4482-5570Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA87_17345RefSeq proteinWP_348982253.1
Context group ID
GCF_003435535::NZ_QWGO01000064.1::G00033Context members
DXA87_RS17335
Partner locus tags
DXA87_RS17335
Partner old locus tags
DXA87_17345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_348982253.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA87_RS17335Primary locus identifier stored in the genes table.
Old locus tagDXA87_17345Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGO01000064.1Sequence record reported by the local genomic context database.
Genomic interval4 482-5 570 nt1 089 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 482-5 570 ntGCF_003435535::NZ_QWGO01000064.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435535::NZ_QWGO01000064.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGO01000064.1All displayed genes belong to this local TCS context.
Neighborhood span4 482-5 570 nt1 089 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 482 nt5 570 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA87_RS17335GCF_003435535#DXA87_RS17335
RRCheBCurrent focus
4 482-5 570 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435535#DXA87_RS17335The current gene is the representative for this cluster.
PFAM architectureResponse_reg + CheB_methylest2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0455567
Simplified PFAM architecture for RROC_0455567
PFAM domain coverage: 284 / 362 aa (78.5%)
1 aa362 aa
Response_regCheB_methylest
- Simplified architecture: Response_reg + CheB_methylest
- Raw architecture: Response_reg[10-115] | CheB_methylest[177-354]
- Domain count: 2
- Matched identifier: RROC_0455567
- Positioned domains: Response_reg 10-115 ; Response_reg 10-115 ; CheB_methylest 177-354 ; CheB_methylest 177-354
Cluster members and taxonomy
Representative gene: GCF_003435535#DXA87_RS17335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 243 · GCF_003435535
AssemblyASM343553v1 · Scaffoldhaploid
Genome composition3 720 446 bp · 48,0% GCDesulfotomaculum sp. OF05-3
Signal transduction countsGenes 66 · HK 31 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyDesulfotomaculaceaeGenusDesulfotomaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Desulfotomaculaceae7Desulfotomaculum
Related genes
Preview from the same derived genome key