1 Hpt#1
9-75 aa · 67 aa · 9.5% of protein
Raw token
Hpt:9:0.0000000000871:75:67:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA87_RS17320
Histidine kinase, CheA
Desulfotomaculum sp. OF05-3 · GCF_003435535
ClassHKTypeCheALength705 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435535#DXA87_RS17320Stable P2CS identifier used across views.
GenomeGCF_003435535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Desulfotomaculaceae; Desulfotomaculum
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length705 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage405 / 705 aa (57.4%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa705 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
312-374 aa · 63 aa · 8.9% of protein
Raw token
H-kinase_dim:312:0.00000000000000425:374:65:673 HATPase_c#3
419-561 aa · 143 aa · 20.3% of protein
Raw token
HATPase_c:419:4.97e-17:561:143:1094 CheW#4
566-697 aa · 132 aa · 18.7% of protein
Raw token
CheW:566:3.53e-17:697:136:138- Raw architecture: Hpt:9:0.0000000000871:75:67:84#H-kinase_dim:312:0.00000000000000425:374:65:67#HATPase_c:419:4.97e-17:561:143:109#CheW:566:3.53e-17:697:136:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435535::NZ_QWGO01000064.1::G00032
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span904-3021Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA87_17330RefSeq proteinWP_117505531.1
Context group ID
GCF_003435535::NZ_QWGO01000064.1::G00032Context members
DXA87_RS17320
Partner locus tags
DXA87_RS17320
Partner old locus tags
DXA87_17330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117505531.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA87_RS17320Primary locus identifier stored in the genes table.
Old locus tagDXA87_17330Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGO01000064.1Sequence record reported by the local genomic context database.
Genomic interval904-3 021 nt2 118 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span904-3 021 ntGCF_003435535::NZ_QWGO01000064.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435535::NZ_QWGO01000064.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGO01000064.1All displayed genes belong to this local TCS context.
Neighborhood span904-3 021 nt2 118 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
904 nt3 021 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA87_RS17320GCF_003435535#DXA87_RS17320
HKCheACurrent focus
904-3 021 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435535#DXA87_RS17320The current gene is the representative for this cluster.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0759552
Simplified PFAM architecture for HKOC_0759552
PFAM domain coverage: 496 / 705 aa (70.4%)
1 aa705 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[9-88] | P2[183-261] | H-kinase_dim[310-373] | HATPase_c[421-561] | CheW[567-698]
- Domain count: 5
- Matched identifier: HKOC_0759552
- Positioned domains: Hpt 9-88 ; P2 183-261 ; H-kinase_dim 310-373 ; HATPase_c 421-561 ; CheW 567-698
Cluster members and taxonomy
Representative gene: GCF_003435535#DXA87_RS17320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 243 · GCF_003435535
AssemblyASM343553v1 · Scaffoldhaploid
Genome composition3 720 446 bp · 48,0% GCDesulfotomaculum sp. OF05-3
Signal transduction countsGenes 66 · HK 31 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyDesulfotomaculaceaeGenusDesulfotomaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Desulfotomaculaceae7Desulfotomaculum
Related genes
Preview from the same derived genome key