1 HAMP#1
194-265 aa · 72 aa · 14.0% of protein
Raw token
HAMP:194:0.0000000000782:265:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA87_RS15235
Histidine kinase, Classic
Desulfotomaculum sp. OF05-3 · GCF_003435535
ClassHKTypeClassicLength514 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435535#DXA87_RS15235Stable P2CS identifier used across views.
GenomeGCF_003435535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Desulfotomaculaceae; Desulfotomaculum
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length514 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 514 aa (48.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa514 aa
Domain-by-domain annotation3 items
2 HisKA#2
290-357 aa · 68 aa · 13.2% of protein
Raw token
HisKA:290:1.1e-17:357:68:643 HATPase_c#3
402-510 aa · 109 aa · 21.2% of protein
Raw token
HATPase_c:402:1.04e-18:510:110:109- Raw architecture: HAMP:194:0.0000000000782:265:72:69#HisKA:290:1.1e-17:357:68:64#HATPase_c:402:1.04e-18:510:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435535::NZ_QWGO01000038.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span22414-24635Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA87_15245RefSeq proteinWP_117505213.1
Context group ID
GCF_003435535::NZ_QWGO01000038.1::G00027Context members
DXA87_RS15230DXA87_RS15235
Partner locus tags
DXA87_RS15230DXA87_RS15235
Partner old locus tags
DXA87_15240DXA87_15245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117505213.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA87_RS15235Primary locus identifier stored in the genes table.
Old locus tagDXA87_15245Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGO01000038.1Sequence record reported by the local genomic context database.
Genomic interval23 091-24 635 nt1 545 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span22 414-24 635 ntGCF_003435535::NZ_QWGO01000038.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435535::NZ_QWGO01000038.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGO01000038.1All displayed genes belong to this local TCS context.
Neighborhood span22 414-24 635 nt2 222 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 414 nt24 635 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA87_RS15230GCF_003435535#DXA87_RS15230
RROmpR
22 414-23 094 nt · Forward (+)
DXA87_RS15235GCF_003435535#DXA87_RS15235
HKClassicCurrent focus
23 091-24 635 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435535#DXA87_RS15235The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1412109
Simplified PFAM architecture for HKOC_1412109
PFAM domain coverage: 176 / 514 aa (34.2%)
1 aa514 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[290-357] | HATPase_c[403-510]
- Domain count: 2
- Matched identifier: HKOC_1412109
- Positioned domains: HisKA 290-357 ; HATPase_c 403-510
Cluster members and taxonomy
Representative gene: GCF_003435535#DXA87_RS15235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 243 · GCF_003435535
AssemblyASM343553v1 · Scaffoldhaploid
Genome composition3 720 446 bp · 48,0% GCDesulfotomaculum sp. OF05-3
Signal transduction countsGenes 66 · HK 31 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyDesulfotomaculaceaeGenusDesulfotomaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Desulfotomaculaceae7Desulfotomaculum
Related genes
Preview from the same derived genome key