1 HAMP#1
87-156 aa · 70 aa · 18.3% of protein
Raw token
HAMP:87:0.00000000000442:156:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA87_RS14995
Histidine kinase, Classic
Desulfotomaculum sp. OF05-3 · GCF_003435535
ClassHKTypeClassicLength383 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435535#DXA87_RS14995Stable P2CS identifier used across views.
GenomeGCF_003435535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Desulfotomaculaceae; Desulfotomaculum
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length383 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 383 aa (64.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa383 aa
Domain-by-domain annotation3 items
2 HisKA#2
160-226 aa · 67 aa · 17.5% of protein
Raw token
HisKA:160:0.00000000000128:226:67:643 HATPase_c#3
272-379 aa · 108 aa · 28.2% of protein
Raw token
HATPase_c:272:1.44e-29:379:108:109- Raw architecture: HAMP:87:0.00000000000442:156:70:69#HisKA:160:0.00000000000128:226:67:64#HATPase_c:272:1.44e-29:379:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435535::NZ_QWGO01000037.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2207-4032Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA87_15005RefSeq proteinWP_117505171.1
Context group ID
GCF_003435535::NZ_QWGO01000037.1::G00026Context members
DXA87_RS14995DXA87_RS15000
Partner locus tags
DXA87_RS14995DXA87_RS15000
Partner old locus tags
DXA87_15005DXA87_15010
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117505171.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA87_RS14995Primary locus identifier stored in the genes table.
Old locus tagDXA87_15005Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGO01000037.1Sequence record reported by the local genomic context database.
Genomic interval2 207-3 358 nt1 152 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 207-4 032 ntGCF_003435535::NZ_QWGO01000037.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435535::NZ_QWGO01000037.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGO01000037.1All displayed genes belong to this local TCS context.
Neighborhood span2 207-4 032 nt1 826 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 207 nt4 032 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA87_RS14995GCF_003435535#DXA87_RS14995
HKClassicCurrent focus
2 207-3 358 nt · Reverse (-)
DXA87_RS15000GCF_003435535#DXA87_RS15000
RROmpR
3 355-4 032 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435535#DXA87_RS14995The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2583568
Simplified PFAM architecture for HKOC_2583568
PFAM domain coverage: 227 / 383 aa (59.3%)
1 aa383 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[103-155] | HisKA[160-225] | HATPase_c[271-378]
- Domain count: 3
- Matched identifier: HKOC_2583568
- Positioned domains: HAMP 103-155 ; HisKA 160-225 ; HATPase_c 271-378
Cluster members and taxonomy
Representative gene: GCF_003435535#DXA87_RS14995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 243 · GCF_003435535
AssemblyASM343553v1 · Scaffoldhaploid
Genome composition3 720 446 bp · 48,0% GCDesulfotomaculum sp. OF05-3
Signal transduction countsGenes 66 · HK 31 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyDesulfotomaculaceaeGenusDesulfotomaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Desulfotomaculaceae7Desulfotomaculum
Related genes
Preview from the same derived genome key