1 HisKA#1
119-185 aa · 67 aa · 19.6% of protein
Raw token
HisKA:119:0.0000000000414:185:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA87_RS13390
Histidine kinase, Classic
Desulfotomaculum sp. OF05-3 · GCF_003435535
ClassHKTypeClassicLength341 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435535#DXA87_RS13390Stable P2CS identifier used across views.
GenomeGCF_003435535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Desulfotomaculaceae; Desulfotomaculum
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length341 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 341 aa (49.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa341 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
237-336 aa · 100 aa · 29.3% of protein
Raw token
HATPase_c:237:2.62e-26:336:101:109- Raw architecture: HisKA:119:0.0000000000414:185:67:64#HATPase_c:237:2.62e-26:336:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435535::NZ_QWGO01000028.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14772-16465Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA87_13400RefSeq proteinWP_117504861.1
Context group ID
GCF_003435535::NZ_QWGO01000028.1::G00021Context members
DXA87_RS13390DXA87_RS13395
Partner locus tags
DXA87_RS13390DXA87_RS13395
Partner old locus tags
DXA87_13400DXA87_13405
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117504861.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA87_RS13390Primary locus identifier stored in the genes table.
Old locus tagDXA87_13400Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGO01000028.1Sequence record reported by the local genomic context database.
Genomic interval14 772-15 797 nt1 026 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span14 772-16 465 ntGCF_003435535::NZ_QWGO01000028.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435535::NZ_QWGO01000028.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGO01000028.1All displayed genes belong to this local TCS context.
Neighborhood span14 772-16 465 nt1 694 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 772 nt16 465 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA87_RS13390GCF_003435535#DXA87_RS13390
HKClassicCurrent focus
14 772-15 797 nt · Reverse (-)
DXA87_RS13395GCF_003435535#DXA87_RS13395
RROmpR
15 800-16 465 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435535#DXA87_RS13390The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2834569
Simplified PFAM architecture for HKOC_2834569
PFAM domain coverage: 166 / 341 aa (48.7%)
1 aa341 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[121-185] | HATPase_c[236-336]
- Domain count: 2
- Matched identifier: HKOC_2834569
- Positioned domains: HisKA 121-185 ; HATPase_c 236-336
Cluster members and taxonomy
Representative gene: GCF_003435535#DXA87_RS13390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 243 · GCF_003435535
AssemblyASM343553v1 · Scaffoldhaploid
Genome composition3 720 446 bp · 48,0% GCDesulfotomaculum sp. OF05-3
Signal transduction countsGenes 66 · HK 31 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyDesulfotomaculaceaeGenusDesulfotomaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Desulfotomaculaceae7Desulfotomaculum
Related genes
Preview from the same derived genome key