1 Response_reg#1
4-117 aa · 114 aa · 21.3% of protein
Raw token
Response_reg:4:1.48e-26:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA87_RS12985
Response regulator, unclassified
Desulfotomaculum sp. OF05-3 · GCF_003435535
ClassRRTypeunclassifiedLength535 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435535#DXA87_RS12985Stable P2CS identifier used across views.
GenomeGCF_003435535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Desulfotomaculaceae; Desulfotomaculum
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length535 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 535 aa (35.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa535 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
441-481 aa · 41 aa · 7.7% of protein
Raw token
HTH_AraC:441:0.0000000554:481:41:423 HTH_AraC#3
496-532 aa · 37 aa · 6.9% of protein
Raw token
HTH_AraC:496:0.0000000278:532:37:42- Raw architecture: Response_reg:4:1.48e-26:117:114:111#HTH_AraC:441:0.0000000554:481:41:42#HTH_AraC:496:0.0000000278:532:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435535::NZ_QWGO01000026.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25713-28396Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA87_12995RefSeq proteinWP_117504747.1
Context group ID
GCF_003435535::NZ_QWGO01000026.1::G00020Context members
DXA87_RS12985DXA87_RS12990
Partner locus tags
DXA87_RS12985DXA87_RS12990
Partner old locus tags
DXA87_12995DXA87_13000
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117504747.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA87_RS12985Primary locus identifier stored in the genes table.
Old locus tagDXA87_12995Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGO01000026.1Sequence record reported by the local genomic context database.
Genomic interval25 713-27 320 nt1 608 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span25 713-28 396 ntGCF_003435535::NZ_QWGO01000026.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435535::NZ_QWGO01000026.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGO01000026.1All displayed genes belong to this local TCS context.
Neighborhood span25 713-28 396 nt2 684 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 713 nt28 396 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA87_RS12985GCF_003435535#DXA87_RS12985
RRunclassifiedCurrent focus
25 713-27 320 nt · Forward (+)
DXA87_RS12990GCF_003435535#DXA87_RS12990
HKClassic
27 317-28 396 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435535#DXA87_RS12985The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0101047
Simplified PFAM architecture for RROC_0101047
PFAM domain coverage: 192 / 535 aa (35.9%)
1 aa535 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[454-532]
- Domain count: 2
- Matched identifier: RROC_0101047
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 454-532 ; HTH_18 454-532
Cluster members and taxonomy
Representative gene: GCF_003435535#DXA87_RS12985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 243 · GCF_003435535
AssemblyASM343553v1 · Scaffoldhaploid
Genome composition3 720 446 bp · 48,0% GCDesulfotomaculum sp. OF05-3
Signal transduction countsGenes 66 · HK 31 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyDesulfotomaculaceaeGenusDesulfotomaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Desulfotomaculaceae7Desulfotomaculum
Related genes
Preview from the same derived genome key