1 Response_reg#1
4-115 aa · 112 aa · 44.4% of protein
Raw token
Response_reg:4:0.000000000000194:115:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA87_RS09685
Response regulator LytTR family
Desulfotomaculum sp. OF05-3 · GCF_003435535
ClassRRTypeLytTRLength252 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435535#DXA87_RS09685Stable P2CS identifier used across views.
GenomeGCF_003435535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Desulfotomaculaceae; Desulfotomaculum
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length252 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage203 / 252 aa (80.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa252 aa
Domain-by-domain annotation2 items
2 LytTR#2
147-237 aa · 91 aa · 36.1% of protein
Raw token
LytTR:147:0.0000000000000353:237:95:98- Raw architecture: Response_reg:4:0.000000000000194:115:114:111#LytTR:147:0.0000000000000353:237:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435535::NZ_QWGO01000015.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span61338-62096Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA87_09685RefSeq proteinWP_117504130.1
Context group ID
GCF_003435535::NZ_QWGO01000015.1::G00008Context members
DXA87_RS09685
Partner locus tags
DXA87_RS09685
Partner old locus tags
DXA87_09685
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117504130.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA87_RS09685Primary locus identifier stored in the genes table.
Old locus tagDXA87_09685Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGO01000015.1Sequence record reported by the local genomic context database.
Genomic interval61 338-62 096 nt759 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span61 338-62 096 ntGCF_003435535::NZ_QWGO01000015.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435535::NZ_QWGO01000015.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGO01000015.1All displayed genes belong to this local TCS context.
Neighborhood span61 338-62 096 nt759 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
61 338 nt62 096 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA87_RS09685GCF_003435535#DXA87_RS09685
RRLytTRCurrent focus
61 338-62 096 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435535#DXA87_RS09685The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0705510
Simplified PFAM architecture for RROC_0705510
PFAM domain coverage: 193 / 252 aa (76.6%)
1 aa252 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[13-115] | LytTR[147-236]
- Domain count: 2
- Matched identifier: RROC_0705510
- Positioned domains: Response_reg 13-115 ; Response_reg 13-115 ; LytTR 147-236 ; LytTR 147-236
Cluster members and taxonomy
Representative gene: GCF_003435535#DXA87_RS09685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 243 · GCF_003435535
AssemblyASM343553v1 · Scaffoldhaploid
Genome composition3 720 446 bp · 48,0% GCDesulfotomaculum sp. OF05-3
Signal transduction countsGenes 66 · HK 31 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyDesulfotomaculaceaeGenusDesulfotomaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Desulfotomaculaceae7Desulfotomaculum
Related genes
Preview from the same derived genome key