1 Response_reg#1
4-116 aa · 113 aa · 40.1% of protein
Raw token
Response_reg:4:4.05e-38:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA87_RS09115
Response regulator, unclassified
Desulfotomaculum sp. OF05-3 · GCF_003435535
ClassRRTypeunclassifiedLength282 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435535#DXA87_RS09115Stable P2CS identifier used across views.
GenomeGCF_003435535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Desulfotomaculaceae; Desulfotomaculum
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length282 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 282 aa (68.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa282 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
189-231 aa · 43 aa · 15.2% of protein
Raw token
HTH_AraC:189:0.000000121:231:43:423 HTH_AraC#3
244-279 aa · 36 aa · 12.8% of protein
Raw token
HTH_AraC:244:0.0000108:279:36:42- Raw architecture: Response_reg:4:4.05e-38:116:113:111#HTH_AraC:189:0.000000121:231:43:42#HTH_AraC:244:0.0000108:279:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435535::NZ_QWGO01000014.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8175-10791Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA87_09115RefSeq proteinWP_117504014.1
Context group ID
GCF_003435535::NZ_QWGO01000014.1::G00007Context members
DXA87_RS09110DXA87_RS09115
Partner locus tags
DXA87_RS09110DXA87_RS09115
Partner old locus tags
DXA87_09110DXA87_09115
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117504014.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA87_RS09115Primary locus identifier stored in the genes table.
Old locus tagDXA87_09115Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGO01000014.1Sequence record reported by the local genomic context database.
Genomic interval9 943-10 791 nt849 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 175-10 791 ntGCF_003435535::NZ_QWGO01000014.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435535::NZ_QWGO01000014.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGO01000014.1All displayed genes belong to this local TCS context.
Neighborhood span8 175-10 791 nt2 617 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 175 nt10 791 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA87_RS09110GCF_003435535#DXA87_RS09110
HKClassic
8 175-9 902 nt · Forward (+)
DXA87_RS09115GCF_003435535#DXA87_RS09115
RRunclassifiedCurrent focus
9 943-10 791 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435535#DXA87_RS09115The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0594684
Simplified PFAM architecture for RROC_0594684
PFAM domain coverage: 192 / 282 aa (68.1%)
1 aa282 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[203-281]
- Domain count: 2
- Matched identifier: RROC_0594684
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 203-281 ; HTH_18 203-281
Cluster members and taxonomy
Representative gene: GCF_003435535#DXA87_RS09115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 243 · GCF_003435535
AssemblyASM343553v1 · Scaffoldhaploid
Genome composition3 720 446 bp · 48,0% GCDesulfotomaculum sp. OF05-3
Signal transduction countsGenes 66 · HK 31 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyDesulfotomaculaceaeGenusDesulfotomaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Desulfotomaculaceae7Desulfotomaculum
Related genes
Preview from the same derived genome key