1 Response_reg#1
7-116 aa · 110 aa · 46.6% of protein
Raw token
Response_reg:7:3.22e-35:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA87_RS08085
Response regulator OmpR family
Desulfotomaculum sp. OF05-3 · GCF_003435535
ClassRRTypeOmpRLength236 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435535#DXA87_RS08085Stable P2CS identifier used across views.
GenomeGCF_003435535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Desulfotomaculaceae; Desulfotomaculum
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 236 aa (78.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
158-232 aa · 75 aa · 31.8% of protein
Raw token
Trans_reg_C:158:2.63e-33:232:77:77- Raw architecture: Response_reg:7:3.22e-35:116:111:111#Trans_reg_C:158:2.63e-33:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435535::NZ_QWGO01000011.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span101918-104031Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA87_08085RefSeq proteinWP_015554002.1
Context group ID
GCF_003435535::NZ_QWGO01000011.1::G00005Context members
DXA87_RS08080DXA87_RS08085
Partner locus tags
DXA87_RS08080DXA87_RS08085
Partner old locus tags
DXA87_08080DXA87_08085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_015554002.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA87_RS08085Primary locus identifier stored in the genes table.
Old locus tagDXA87_08085Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGO01000011.1Sequence record reported by the local genomic context database.
Genomic interval103 321-104 031 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span101 918-104 031 ntGCF_003435535::NZ_QWGO01000011.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435535::NZ_QWGO01000011.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGO01000011.1All displayed genes belong to this local TCS context.
Neighborhood span101 918-104 031 nt2 114 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
101 918 nt104 031 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA87_RS08080GCF_003435535#DXA87_RS08080
HKClassic
101 918-103 324 nt · Reverse (-)
DXA87_RS08085GCF_003435535#DXA87_RS08085
RROmpRCurrent focus
103 321-104 031 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435125#DW677_RS06235Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0995530
Simplified PFAM architecture for RROC_0995530
PFAM domain coverage: 184 / 236 aa (78.0%)
1 aa236 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-116] | Trans_reg_C[159-232]
- Domain count: 2
- Matched identifier: RROC_0995530
- Positioned domains: Response_reg 7-116 ; Response_reg 7-116 ; Trans_reg_C 159-232 ; Trans_reg_C 159-232
Cluster members and taxonomy
Representative gene: GCF_003435125#DW677_RS06235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 243 · GCF_003435535
AssemblyASM343553v1 · Scaffoldhaploid
Genome composition3 720 446 bp · 48,0% GCDesulfotomaculum sp. OF05-3
Signal transduction countsGenes 66 · HK 31 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyDesulfotomaculaceaeGenusDesulfotomaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Desulfotomaculaceae7Desulfotomaculum
Related genes
Preview from the same derived genome key