1 Response_reg#1
3-115 aa · 113 aa · 40.4% of protein
Raw token
Response_reg:3:8.3e-18:115:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA87_RS02925
Response regulator, unclassified
Desulfotomaculum sp. OF05-3 · GCF_003435535
ClassRRTypeunclassifiedLength280 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435535#DXA87_RS02925Stable P2CS identifier used across views.
GenomeGCF_003435535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Desulfotomaculaceae; Desulfotomaculum
Domain signature
Compact overview inferred from the domain field
Response_regYcbB
Protein length280 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage233 / 280 aa (83.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 YcbBSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 YcbB#2
155-274 aa · 120 aa · 42.9% of protein
Raw token
YcbB:155:6.07e-45:274:131:131- Raw architecture: Response_reg:3:8.3e-18:115:117:111#YcbB:155:6.07e-45:274:131:131
- Domain description: 1 Response_reg,1 YcbB
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435535::NZ_QWGO01000003.1::G00022
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span80447-81289Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA87_02925RefSeq proteinWP_117470180.1
Context group ID
GCF_003435535::NZ_QWGO01000003.1::G00022Context members
DXA87_RS02925
Partner locus tags
DXA87_RS02925
Partner old locus tags
DXA87_02925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117470180.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA87_RS02925Primary locus identifier stored in the genes table.
Old locus tagDXA87_02925Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGO01000003.1Sequence record reported by the local genomic context database.
Genomic interval80 447-81 289 nt843 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span80 447-81 289 ntGCF_003435535::NZ_QWGO01000003.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435535::NZ_QWGO01000003.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGO01000003.1All displayed genes belong to this local TCS context.
Neighborhood span80 447-81 289 nt843 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
80 447 nt81 289 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA87_RS02925GCF_003435535#DXA87_RS02925
RRunclassifiedCurrent focus
80 447-81 289 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435225#DWY93_RS09455Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + YcbB2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0597120
Simplified PFAM architecture for RROC_0597120
PFAM domain coverage: 230 / 280 aa (82.1%)
1 aa280 aa
Response_regYcbB
- Simplified architecture: Response_reg + YcbB
- Raw architecture: Response_reg[3-113] | YcbB[156-274]
- Domain count: 2
- Matched identifier: RROC_0597120
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; YcbB 156-274 ; YcbB 156-274
Cluster members and taxonomy
Representative gene: GCF_003435225#DWY93_RS09455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 243 · GCF_003435535
AssemblyASM343553v1 · Scaffoldhaploid
Genome composition3 720 446 bp · 48,0% GCDesulfotomaculum sp. OF05-3
Signal transduction countsGenes 66 · HK 31 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyDesulfotomaculaceaeGenusDesulfotomaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Desulfotomaculaceae7Desulfotomaculum
Related genes
Preview from the same derived genome key