1 HAMP#1
170-239 aa · 70 aa · 15.0% of protein
Raw token
HAMP:170:0.0000000000507:239:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA87_RS08080
Histidine kinase, Classic
Desulfotomaculum sp. OF05-3 · GCF_003435535
ClassHKTypeClassicLength468 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435535#DXA87_RS08080Stable P2CS identifier used across views.
GenomeGCF_003435535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Desulfotomaculaceae; Desulfotomaculum
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length468 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 468 aa (52.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa468 aa
Domain-by-domain annotation3 items
2 HisKA#2
247-308 aa · 62 aa · 13.2% of protein
Raw token
HisKA:247:0.00000000000000132:308:62:643 HATPase_c#3
354-466 aa · 113 aa · 24.1% of protein
Raw token
HATPase_c:354:4.25e-30:466:113:109- Raw architecture: HAMP:170:0.0000000000507:239:70:69#HisKA:247:0.00000000000000132:308:62:64#HATPase_c:354:4.25e-30:466:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435535::NZ_QWGO01000011.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span101918-104031Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA87_08080RefSeq proteinWP_117483917.1
Context group ID
GCF_003435535::NZ_QWGO01000011.1::G00005Context members
DXA87_RS08080DXA87_RS08085
Partner locus tags
DXA87_RS08080DXA87_RS08085
Partner old locus tags
DXA87_08080DXA87_08085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117483917.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA87_RS08080Primary locus identifier stored in the genes table.
Old locus tagDXA87_08080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGO01000011.1Sequence record reported by the local genomic context database.
Genomic interval101 918-103 324 nt1 407 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span101 918-104 031 ntGCF_003435535::NZ_QWGO01000011.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435535::NZ_QWGO01000011.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGO01000011.1All displayed genes belong to this local TCS context.
Neighborhood span101 918-104 031 nt2 114 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
101 918 nt104 031 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA87_RS08080GCF_003435535#DXA87_RS08080
HKClassicCurrent focus
101 918-103 324 nt · Reverse (-)
DXA87_RS08085GCF_003435535#DXA87_RS08085
RROmpR
103 321-104 031 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435535#DXA87_RS08080The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1740168
Simplified PFAM architecture for HKOC_1740168
PFAM domain coverage: 216 / 468 aa (46.2%)
1 aa468 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[195-238] | HisKA[246-308] | HATPase_c[357-465]
- Domain count: 3
- Matched identifier: HKOC_1740168
- Positioned domains: HAMP 195-238 ; HisKA 246-308 ; HATPase_c 357-465
Cluster members and taxonomy
Representative gene: GCF_003435535#DXA87_RS08080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 243 · GCF_003435535
AssemblyASM343553v1 · Scaffoldhaploid
Genome composition3 720 446 bp · 48,0% GCDesulfotomaculum sp. OF05-3
Signal transduction countsGenes 66 · HK 31 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyDesulfotomaculaceaeGenusDesulfotomaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Desulfotomaculaceae7Desulfotomaculum
Related genes
Preview from the same derived genome key