1 Response_reg#1
7-117 aa · 111 aa · 53.6% of protein
Raw token
Response_reg:7:6.99e-28:117:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA87_RS07730
Response regulator, unclassified
Desulfotomaculum sp. OF05-3 · GCF_003435535
ClassRRTypeunclassifiedLength207 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435535#DXA87_RS07730Stable P2CS identifier used across views.
GenomeGCF_003435535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Desulfotomaculaceae; Desulfotomaculum
Domain signature
Compact overview inferred from the domain field
Response_regHTH_IclR
Protein length207 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 207 aa (77.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_IclRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa207 aa
Domain-by-domain annotation2 items
2 HTH_IclR#2
133-181 aa · 49 aa · 23.7% of protein
Raw token
HTH_IclR:133:0.00000034:181:49:49- Raw architecture: Response_reg:7:6.99e-28:117:111:111#HTH_IclR:133:0.00000034:181:49:49
- Domain description: 1 Response_reg,1 HTH_IclR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435535::NZ_QWGO01000011.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12480-14511Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA87_07730RefSeq proteinWP_117483873.1
Context group ID
GCF_003435535::NZ_QWGO01000011.1::G00004Context members
DXA87_RS07725DXA87_RS07730
Partner locus tags
DXA87_RS07725DXA87_RS07730
Partner old locus tags
DXA87_07725DXA87_07730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117483873.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA87_RS07730Primary locus identifier stored in the genes table.
Old locus tagDXA87_07730Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGO01000011.1Sequence record reported by the local genomic context database.
Genomic interval13 888-14 511 nt624 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 480-14 511 ntGCF_003435535::NZ_QWGO01000011.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435535::NZ_QWGO01000011.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGO01000011.1All displayed genes belong to this local TCS context.
Neighborhood span12 480-14 511 nt2 032 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 480 nt14 511 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA87_RS07725GCF_003435535#DXA87_RS07725
HKClassic
12 480-13 919 nt · Forward (+)
DXA87_RS07730GCF_003435535#DXA87_RS07730
RRunclassifiedCurrent focus
13 888-14 511 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435375#DW826_RS11885Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_IclR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2073365
Simplified PFAM architecture for RROC_2073365
PFAM domain coverage: 149 / 207 aa (72.0%)
1 aa207 aa
Response_regHTH_IclR
- Simplified architecture: Response_reg + HTH_IclR
- Raw architecture: Response_reg[7-117] | HTH_IclR[145-182]
- Domain count: 2
- Matched identifier: RROC_2073365
- Positioned domains: Response_reg 7-117 ; Response_reg 7-117 ; HTH_IclR 145-182 ; HTH_IclR 145-182
Cluster members and taxonomy
Representative gene: GCF_003435375#DW826_RS11885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 243 · GCF_003435535
AssemblyASM343553v1 · Scaffoldhaploid
Genome composition3 720 446 bp · 48,0% GCDesulfotomaculum sp. OF05-3
Signal transduction countsGenes 66 · HK 31 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyDesulfotomaculaceaeGenusDesulfotomaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Desulfotomaculaceae7Desulfotomaculum
Related genes
Preview from the same derived genome key