1 HisKA#1
257-318 aa · 62 aa · 12.9% of protein
Raw token
HisKA:257:0.0000002:318:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA87_RS07725
Histidine kinase, Classic
Desulfotomaculum sp. OF05-3 · GCF_003435535
ClassHKTypeClassicLength479 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435535#DXA87_RS07725Stable P2CS identifier used across views.
GenomeGCF_003435535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Desulfotomaculaceae; Desulfotomaculum
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length479 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 479 aa (35.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa479 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
358-466 aa · 109 aa · 22.8% of protein
Raw token
HATPase_c:358:2.7e-20:466:113:109- Raw architecture: HisKA:257:0.0000002:318:62:64#HATPase_c:358:2.7e-20:466:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435535::NZ_QWGO01000011.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12480-14511Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA87_07725RefSeq proteinWP_117503748.1
Context group ID
GCF_003435535::NZ_QWGO01000011.1::G00004Context members
DXA87_RS07725DXA87_RS07730
Partner locus tags
DXA87_RS07725DXA87_RS07730
Partner old locus tags
DXA87_07725DXA87_07730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117503748.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA87_RS07725Primary locus identifier stored in the genes table.
Old locus tagDXA87_07725Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGO01000011.1Sequence record reported by the local genomic context database.
Genomic interval12 480-13 919 nt1 440 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 480-14 511 ntGCF_003435535::NZ_QWGO01000011.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435535::NZ_QWGO01000011.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGO01000011.1All displayed genes belong to this local TCS context.
Neighborhood span12 480-14 511 nt2 032 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 480 nt14 511 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA87_RS07725GCF_003435535#DXA87_RS07725
HKClassicCurrent focus
12 480-13 919 nt · Forward (+)
DXA87_RS07730GCF_003435535#DXA87_RS07730
RRunclassified
13 888-14 511 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435535#DXA87_RS07725The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1630200
Simplified PFAM architecture for HKOC_1630200
PFAM domain coverage: 164 / 479 aa (34.2%)
1 aa479 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[259-315] | HATPase_c[360-466]
- Domain count: 2
- Matched identifier: HKOC_1630200
- Positioned domains: HisKA 259-315 ; HATPase_c 360-466
Cluster members and taxonomy
Representative gene: GCF_003435535#DXA87_RS07725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 243 · GCF_003435535
AssemblyASM343553v1 · Scaffoldhaploid
Genome composition3 720 446 bp · 48,0% GCDesulfotomaculum sp. OF05-3
Signal transduction countsGenes 66 · HK 31 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyDesulfotomaculaceaeGenusDesulfotomaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Desulfotomaculaceae7Desulfotomaculum
Related genes
Preview from the same derived genome key