1 HisKA#1
544-609 aa · 66 aa · 8.6% of protein
Raw token
HisKA:544:0.00000000000000359:609:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA87_RS06440
Histidine kinase, Classic
Desulfotomaculum sp. OF05-3 · GCF_003435535
ClassHKTypeClassicLength764 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435535#DXA87_RS06440Stable P2CS identifier used across views.
GenomeGCF_003435535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Desulfotomaculaceae; Desulfotomaculum
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length764 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 764 aa (20.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa764 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
655-747 aa · 93 aa · 12.2% of protein
Raw token
HATPase_c:655:0.00000000000000244:747:96:109- Raw architecture: HisKA:544:0.00000000000000359:609:66:64#HATPase_c:655:0.00000000000000244:747:96:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435535::NZ_QWGO01000008.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span96961-99962Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA87_06440RefSeq proteinWP_117503603.1
Context group ID
GCF_003435535::NZ_QWGO01000008.1::G00034Context members
DXA87_RS06435DXA87_RS06440
Partner locus tags
DXA87_RS06435DXA87_RS06440
Partner old locus tags
DXA87_06435DXA87_06440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117503603.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA87_RS06440Primary locus identifier stored in the genes table.
Old locus tagDXA87_06440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGO01000008.1Sequence record reported by the local genomic context database.
Genomic interval97 668-99 962 nt2 295 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span96 961-99 962 ntGCF_003435535::NZ_QWGO01000008.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435535::NZ_QWGO01000008.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGO01000008.1All displayed genes belong to this local TCS context.
Neighborhood span96 961-99 962 nt3 002 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
96 961 nt99 962 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA87_RS06435GCF_003435535#DXA87_RS06435
RROmpR
96 961-97 656 nt · Forward (+)
DXA87_RS06440GCF_003435535#DXA87_RS06440
HKClassicCurrent focus
97 668-99 962 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435535#DXA87_RS06440The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0634078
Simplified PFAM architecture for HKOC_0634078
PFAM domain coverage: 158 / 764 aa (20.7%)
1 aa764 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[544-609] | HATPase_c[656-747]
- Domain count: 2
- Matched identifier: HKOC_0634078
- Positioned domains: HisKA 544-609 ; HATPase_c 656-747
Cluster members and taxonomy
Representative gene: GCF_003435535#DXA87_RS06440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 243 · GCF_003435535
AssemblyASM343553v1 · Scaffoldhaploid
Genome composition3 720 446 bp · 48,0% GCDesulfotomaculum sp. OF05-3
Signal transduction countsGenes 66 · HK 31 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyDesulfotomaculaceaeGenusDesulfotomaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Desulfotomaculaceae7Desulfotomaculum
Related genes
Preview from the same derived genome key