1 Response_reg#1
6-116 aa · 111 aa · 48.3% of protein
Raw token
Response_reg:6:9e-36:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA87_RS04720
Response regulator OmpR family
Desulfotomaculum sp. OF05-3 · GCF_003435535
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435535#DXA87_RS04720Stable P2CS identifier used across views.
GenomeGCF_003435535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Desulfotomaculaceae; Desulfotomaculum
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 230 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-228 aa · 76 aa · 33.0% of protein
Raw token
Trans_reg_C:153:9.88e-35:228:77:77- Raw architecture: Response_reg:6:9e-36:116:111:111#Trans_reg_C:153:9.88e-35:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435535::NZ_QWGO01000006.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7574-10429Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA87_04720RefSeq proteinWP_117469574.1
Context group ID
GCF_003435535::NZ_QWGO01000006.1::G00031Context members
DXA87_RS04715DXA87_RS04720
Partner locus tags
DXA87_RS04715DXA87_RS04720
Partner old locus tags
DXA87_04715DXA87_04720
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117469574.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA87_RS04720Primary locus identifier stored in the genes table.
Old locus tagDXA87_04720Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGO01000006.1Sequence record reported by the local genomic context database.
Genomic interval9 737-10 429 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 574-10 429 ntGCF_003435535::NZ_QWGO01000006.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435535::NZ_QWGO01000006.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGO01000006.1All displayed genes belong to this local TCS context.
Neighborhood span7 574-10 429 nt2 856 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 574 nt10 429 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA87_RS04715GCF_003435535#DXA87_RS04715
HKHybrid
7 574-9 727 nt · Reverse (-)
DXA87_RS04720GCF_003435535#DXA87_RS04720
RROmpRCurrent focus
9 737-10 429 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435125#DW677_RS10100Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1211253
Simplified PFAM architecture for RROC_1211253
PFAM domain coverage: 185 / 230 aa (80.4%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_1211253
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 153-228 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_003435125#DW677_RS10100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 243 · GCF_003435535
AssemblyASM343553v1 · Scaffoldhaploid
Genome composition3 720 446 bp · 48,0% GCDesulfotomaculum sp. OF05-3
Signal transduction countsGenes 66 · HK 31 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyDesulfotomaculaceaeGenusDesulfotomaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Desulfotomaculaceae7Desulfotomaculum
Related genes
Preview from the same derived genome key