1 Response_reg#1
3-120 aa · 118 aa · 49.2% of protein
Raw token
Response_reg:3:3.25e-30:120:120:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA87_RS03225
Response regulator LytTR family
Desulfotomaculum sp. OF05-3 · GCF_003435535
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435535#DXA87_RS03225Stable P2CS identifier used across views.
GenomeGCF_003435535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Desulfotomaculaceae; Desulfotomaculum
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage215 / 240 aa (89.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
143-239 aa · 97 aa · 40.4% of protein
Raw token
LytTR:143:4.49e-24:239:97:98- Raw architecture: Response_reg:3:3.25e-30:120:120:111#LytTR:143:4.49e-24:239:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435535::NZ_QWGO01000003.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span144668-147234Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA87_03225RefSeq proteinWP_117503217.1
Context group ID
GCF_003435535::NZ_QWGO01000003.1::G00024Context members
DXA87_RS03220DXA87_RS03225
Partner locus tags
DXA87_RS03220DXA87_RS03225
Partner old locus tags
DXA87_03220DXA87_03225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117503217.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA87_RS03225Primary locus identifier stored in the genes table.
Old locus tagDXA87_03225Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGO01000003.1Sequence record reported by the local genomic context database.
Genomic interval146 512-147 234 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span144 668-147 234 ntGCF_003435535::NZ_QWGO01000003.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435535::NZ_QWGO01000003.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGO01000003.1All displayed genes belong to this local TCS context.
Neighborhood span144 668-147 234 nt2 567 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
144 668 nt147 234 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA87_RS03220GCF_003435535#DXA87_RS03220
HKClassic
144 668-146 431 nt · Forward (+)
DXA87_RS03225GCF_003435535#DXA87_RS03225
RRLytTRCurrent focus
146 512-147 234 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435125#DW677_RS13070Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0888241
Simplified PFAM architecture for RROC_0888241
PFAM domain coverage: 205 / 240 aa (85.4%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-111] | LytTR[143-238]
- Domain count: 2
- Matched identifier: RROC_0888241
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; LytTR 143-238 ; LytTR 143-238
Cluster members and taxonomy
Representative gene: GCF_003435125#DW677_RS13070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 243 · GCF_003435535
AssemblyASM343553v1 · Scaffoldhaploid
Genome composition3 720 446 bp · 48,0% GCDesulfotomaculum sp. OF05-3
Signal transduction countsGenes 66 · HK 31 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyDesulfotomaculaceaeGenusDesulfotomaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Desulfotomaculaceae7Desulfotomaculum
Related genes
Preview from the same derived genome key