1 Response_reg#1
4-117 aa · 114 aa · 47.9% of protein
Raw token
Response_reg:4:2.56e-33:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC51_RS24495
Response regulator OmpR family
Eisenbergiella massiliensis · GCF_003435485
ClassRRTypeOmpRLength238 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435485#DXC51_RS24495Stable P2CS identifier used across views.
GenomeGCF_003435485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 238 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-227 aa · 75 aa · 31.5% of protein
Raw token
Trans_reg_C:153:6.87e-29:227:77:77- Raw architecture: Response_reg:4:2.56e-33:117:114:111#Trans_reg_C:153:6.87e-29:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435485::NZ_QVLV01000026.1::G00080
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span28664-30787Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC51_24480RefSeq proteinWP_117545578.1
Context group ID
GCF_003435485::NZ_QVLV01000026.1::G00080Context members
DXC51_RS24495DXC51_RS24500
Partner locus tags
DXC51_RS24495DXC51_RS24500
Partner old locus tags
DXC51_24480DXC51_24485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117545578.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3HX41Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3HX41_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC51_RS24495Primary locus identifier stored in the genes table.
Old locus tagDXC51_24480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVLV01000026.1Sequence record reported by the local genomic context database.
Genomic interval28 664-29 380 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span28 664-30 787 ntGCF_003435485::NZ_QVLV01000026.1::G00080
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435485::NZ_QVLV01000026.1::G00080Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVLV01000026.1All displayed genes belong to this local TCS context.
Neighborhood span28 664-30 787 nt2 124 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 664 nt30 787 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC51_RS24495GCF_003435485#DXC51_RS24495
RROmpRCurrent focus
28 664-29 380 nt · Forward (+)
DXC51_RS24500GCF_003435485#DXC51_RS24500
HKClassic
29 384-30 787 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435485#DXC51_RS24495The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0940358
Simplified PFAM architecture for RROC_0940358
PFAM domain coverage: 189 / 238 aa (79.4%)
1 aa238 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-117] | Trans_reg_C[153-227]
- Domain count: 2
- Matched identifier: RROC_0940358
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; Trans_reg_C 153-227 ; Trans_reg_C 153-227
Cluster members and taxonomy
Representative gene: GCF_003435485#DXC51_RS24495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_003435485
AssemblyASM343548v1 · Scaffoldreference genome · haploid
Genome composition6 692 195 bp · 48,0% GCEisenbergiella massiliensis
Signal transduction countsGenes 296 · HK 150 · RR 143CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key