1 Response_reg#1
4-116 aa · 113 aa · 21.3% of protein
Raw token
Response_reg:4:6.9e-30:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC51_RS00250
Response regulator, unclassified
Eisenbergiella massiliensis · GCF_003435485
ClassRRTypeunclassifiedLength531 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435485#DXC51_RS00250Stable P2CS identifier used across views.
GenomeGCF_003435485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length531 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 531 aa (35.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa531 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
426-465 aa · 40 aa · 7.5% of protein
Raw token
HTH_AraC:426:0.00000948:465:40:423 HTH_AraC#3
481-517 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:481:0.00000000762:517:37:42- Raw architecture: Response_reg:4:6.9e-30:116:113:111#HTH_AraC:426:0.00000948:465:40:42#HTH_AraC:481:0.00000000762:517:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435485::NZ_QVLV01000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span62870-64465Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC51_00245RefSeq proteinWP_025487911.1
Context group ID
GCF_003435485::NZ_QVLV01000001.1::G00004Context members
DXC51_RS00250
Partner locus tags
DXC51_RS00250
Partner old locus tags
DXC51_00245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025487911.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3ICL3Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3ICL3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC51_RS00250Primary locus identifier stored in the genes table.
Old locus tagDXC51_00245Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVLV01000001.1Sequence record reported by the local genomic context database.
Genomic interval62 870-64 465 nt1 596 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span62 870-64 465 ntGCF_003435485::NZ_QVLV01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435485::NZ_QVLV01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVLV01000001.1All displayed genes belong to this local TCS context.
Neighborhood span62 870-64 465 nt1 596 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
62 870 nt64 465 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXC51_RS00250GCF_003435485#DXC51_RS00250
RRunclassifiedCurrent focus
62 870-64 465 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435485#DXC51_RS00250The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0110010
Simplified PFAM architecture for RROC_0110010
PFAM domain coverage: 189 / 531 aa (35.6%)
1 aa531 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[442-517]
- Domain count: 2
- Matched identifier: RROC_0110010
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 442-517 ; HTH_18 442-517
Cluster members and taxonomy
Representative gene: GCF_003435485#DXC51_RS00250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_003435485
AssemblyASM343548v1 · Scaffoldreference genome · haploid
Genome composition6 692 195 bp · 48,0% GCEisenbergiella massiliensis
Signal transduction countsGenes 296 · HK 150 · RR 143CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key