1 Response_reg#1
3-115 aa · 113 aa · 34.8% of protein
Raw token
Response_reg:3:1.93e-26:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC51_RS00510
Response regulator, unclassified
Eisenbergiella massiliensis · GCF_003435485
ClassRRTypeunclassifiedLength325 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435485#DXC51_RS00510Stable P2CS identifier used across views.
GenomeGCF_003435485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length325 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 325 aa (34.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa325 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:1.93e-26:115:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435485::NZ_QVLV01000001.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span125964-128556Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC51_00505RefSeq proteinWP_180998070.1
Context group ID
GCF_003435485::NZ_QVLV01000001.1::G00007Context members
DXC51_RS00505DXC51_RS00510
Partner locus tags
DXC51_RS00505DXC51_RS00510
Partner old locus tags
DXC51_00500DXC51_00505
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_180998070.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC51_RS00510Primary locus identifier stored in the genes table.
Old locus tagDXC51_00505Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVLV01000001.1Sequence record reported by the local genomic context database.
Genomic interval127 579-128 556 nt978 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span125 964-128 556 ntGCF_003435485::NZ_QVLV01000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435485::NZ_QVLV01000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVLV01000001.1All displayed genes belong to this local TCS context.
Neighborhood span125 964-128 556 nt2 593 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
125 964 nt128 556 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC51_RS00505GCF_003435485#DXC51_RS00505
HKClassic
125 964-127 529 nt · Forward (+)
DXC51_RS00510GCF_003435485#DXC51_RS00510
RRunclassifiedCurrent focus
127 579-128 556 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435485#DXC51_RS00510The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0525186
Simplified PFAM architecture for RROC_0525186
PFAM domain coverage: 190 / 325 aa (58.5%)
1 aa325 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-114] | HTH_18[244-321]
- Domain count: 2
- Matched identifier: RROC_0525186
- Positioned domains: Response_reg 3-114 ; Response_reg 3-114 ; HTH_18 244-321 ; HTH_18 244-321
Cluster members and taxonomy
Representative gene: GCF_003435485#DXC51_RS00510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_003435485
AssemblyASM343548v1 · Scaffoldreference genome · haploid
Genome composition6 692 195 bp · 48,0% GCEisenbergiella massiliensis
Signal transduction countsGenes 296 · HK 150 · RR 143CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key