1 Response_reg#1
4-113 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:4:1.75e-36:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC51_RS00410
Response regulator OmpR family
Eisenbergiella massiliensis · GCF_003435485
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435485#DXC51_RS00410Stable P2CS identifier used across views.
GenomeGCF_003435485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 231 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-228 aa · 78 aa · 33.8% of protein
Raw token
Trans_reg_C:151:2.03e-31:228:78:77- Raw architecture: Response_reg:4:1.75e-36:113:110:111#Trans_reg_C:151:2.03e-31:228:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435485::NZ_QVLV01000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span102536-104181Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC51_00405RefSeq proteinWP_021634528.1
Context group ID
GCF_003435485::NZ_QVLV01000001.1::G00006Context members
DXC51_RS00410DXC51_RS00415
Partner locus tags
DXC51_RS00410DXC51_RS00415
Partner old locus tags
DXC51_00405DXC51_00410
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021634528.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3ICR7Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3ICR7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC51_RS00410Primary locus identifier stored in the genes table.
Old locus tagDXC51_00405Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVLV01000001.1Sequence record reported by the local genomic context database.
Genomic interval102 536-103 231 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span102 536-104 181 ntGCF_003435485::NZ_QVLV01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435485::NZ_QVLV01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVLV01000001.1All displayed genes belong to this local TCS context.
Neighborhood span102 536-104 181 nt1 646 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
102 536 nt104 181 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC51_RS00410GCF_003435485#DXC51_RS00410
RROmpRCurrent focus
102 536-103 231 nt · Forward (+)
DXC51_RS00415GCF_003435485#DXC51_RS00415
HKClassic
103 243-104 181 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466465#HMPREF1548_RS04175Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1160195
Simplified PFAM architecture for RROC_1160195
PFAM domain coverage: 187 / 231 aa (81.0%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[152-228]
- Domain count: 2
- Matched identifier: RROC_1160195
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 152-228 ; Trans_reg_C 152-228
Cluster members and taxonomy
Representative gene: GCF_000466465#HMPREF1548_RS04175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_003435485
AssemblyASM343548v1 · Scaffoldreference genome · haploid
Genome composition6 692 195 bp · 48,0% GCEisenbergiella massiliensis
Signal transduction countsGenes 296 · HK 150 · RR 143CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key