1 HAMP#1
296-364 aa · 69 aa · 11.4% of protein
Raw token
HAMP:296:0.00000546:364:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC51_RS00275
Histidine kinase, Classic
Eisenbergiella massiliensis · GCF_003435485
ClassHKTypeClassicLength607 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435485#DXC51_RS00275Stable P2CS identifier used across views.
GenomeGCF_003435485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length607 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage262 / 607 aa (43.2%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa607 aa
Domain-by-domain annotation3 items
2 His_kinase#2
386-466 aa · 81 aa · 13.3% of protein
Raw token
His_kinase:386:3.08e-29:466:81:803 HATPase_c#3
485-596 aa · 112 aa · 18.5% of protein
Raw token
HATPase_c:485:0.00000000000000292:596:114:109- Raw architecture: HAMP:296:0.00000546:364:69:69#His_kinase:386:3.08e-29:466:81:80#HATPase_c:485:0.00000000000000292:596:114:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435485::NZ_QVLV01000001.1::G00005
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span72120-73943Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC51_00270RefSeq proteinWP_025487914.1
Context group ID
GCF_003435485::NZ_QVLV01000001.1::G00005Context members
DXC51_RS00275
Partner locus tags
DXC51_RS00275
Partner old locus tags
DXC51_00270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025487914.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3ICL5Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3ICL5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC51_RS00275Primary locus identifier stored in the genes table.
Old locus tagDXC51_00270Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVLV01000001.1Sequence record reported by the local genomic context database.
Genomic interval72 120-73 943 nt1 824 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span72 120-73 943 ntGCF_003435485::NZ_QVLV01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435485::NZ_QVLV01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVLV01000001.1All displayed genes belong to this local TCS context.
Neighborhood span72 120-73 943 nt1 824 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 120 nt73 943 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXC51_RS00275GCF_003435485#DXC51_RS00275
HKClassicCurrent focus
72 120-73 943 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435265#DWY69_RS22795Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1019818
Simplified PFAM architecture for HKOC_1019818
PFAM domain coverage: 190 / 607 aa (31.3%)
1 aa607 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[386-466] | HATPase_c[487-595]
- Domain count: 2
- Matched identifier: HKOC_1019818
- Positioned domains: His_kinase 386-466 ; HATPase_c 487-595
Cluster members and taxonomy
Representative gene: GCF_003435265#DWY69_RS22795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_003435485
AssemblyASM343548v1 · Scaffoldreference genome · haploid
Genome composition6 692 195 bp · 48,0% GCEisenbergiella massiliensis
Signal transduction countsGenes 296 · HK 150 · RR 143CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key