1 KdpD#1
22-229 aa · 208 aa · 23.2% of protein
Raw token
KdpD:22:2.73e-137:229:208:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW687_RS10825
Histidine kinase, Classic
Anaerofustis stercorihominis · GCF_003435385
ClassHKTypeClassicLength896 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435385#DW687_RS10825Stable P2CS identifier used across views.
GenomeGCF_003435385Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
KdpDGAF_3HisKAHATPase_c
Protein length896 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage513 / 896 aa (57.3%)Merged over positioned domains only.
Domain description1 KdpD,1 GAF_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa896 aa
Domain-by-domain annotation4 items
2 GAF_3#2
525-649 aa · 125 aa · 14.0% of protein
Raw token
GAF_3:525:0.0000000259:649:129:1293 HisKA#3
669-736 aa · 68 aa · 7.6% of protein
Raw token
HisKA:669:0.00000000000169:736:68:644 HATPase_c#4
780-891 aa · 112 aa · 12.5% of protein
Raw token
HATPase_c:780:5.57e-28:891:112:109- Raw architecture: KdpD:22:2.73e-137:229:208:210#GAF_3:525:0.0000000259:649:129:129#HisKA:669:0.00000000000169:736:68:64#HATPase_c:780:5.57e-28:891:112:109
- Domain description: 1 KdpD,1 GAF_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435385::NZ_QUSM01000007.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span88569-91959Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW687_10820RefSeq proteinWP_117532729.1
Context group ID
GCF_003435385::NZ_QUSM01000007.1::G00025Context members
DW687_RS10820DW687_RS10825
Partner locus tags
DW687_RS10820DW687_RS10825
Partner old locus tags
DW687_10815DW687_10820
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117532729.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DVV3Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DVV3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW687_RS10825Primary locus identifier stored in the genes table.
Old locus tagDW687_10820Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUSM01000007.1Sequence record reported by the local genomic context database.
Genomic interval89 269-91 959 nt2 691 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span88 569-91 959 ntGCF_003435385::NZ_QUSM01000007.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435385::NZ_QUSM01000007.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUSM01000007.1All displayed genes belong to this local TCS context.
Neighborhood span88 569-91 959 nt3 391 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
88 569 nt91 959 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW687_RS10820GCF_003435385#DW687_RS10820
RROmpR
88 569-89 276 nt · Reverse (-)
DW687_RS10825GCF_003435385#DW687_RS10825
HKClassicCurrent focus
89 269-91 959 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435385#DW687_RS10825The current gene is the representative for this cluster.
PFAM architectureKdpD + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0413825
Simplified PFAM architecture for HKOC_0413825
PFAM domain coverage: 491 / 896 aa (54.8%)
1 aa896 aa
KdpDDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[22-229] | DUF4118[401-505] | HisKA[669-736] | HATPase_c[781-890]
- Domain count: 4
- Matched identifier: HKOC_0413825
- Positioned domains: KdpD 22-229 ; DUF4118 401-505 ; HisKA 669-736 ; HATPase_c 781-890
Cluster members and taxonomy
Representative gene: GCF_003435385#DW687_RS10825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_003435385
AssemblyASM343538v1 · Scaffoldhaploid
Genome composition2 409 730 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 39 · HK 25 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key