1 HAMP#1
179-246 aa · 68 aa · 14.4% of protein
Raw token
HAMP:179:0.000000000185:246:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW687_RS07710
Histidine kinase, Classic
Anaerofustis stercorihominis · GCF_003435385
ClassHKTypeClassicLength473 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435385#DW687_RS07710Stable P2CS identifier used across views.
GenomeGCF_003435385Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length473 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 473 aa (51.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa473 aa
Domain-by-domain annotation3 items
2 HisKA#2
253-316 aa · 64 aa · 13.5% of protein
Raw token
HisKA:253:5.65e-21:316:64:643 HATPase_c#3
358-467 aa · 110 aa · 23.3% of protein
Raw token
HATPase_c:358:2.52e-25:467:110:109- Raw architecture: HAMP:179:0.000000000185:246:68:69#HisKA:253:5.65e-21:316:64:64#HATPase_c:358:2.52e-25:467:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435385::NZ_QUSM01000003.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span610725-612810Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW687_07705RefSeq proteinWP_242987873.1
Context group ID
GCF_003435385::NZ_QUSM01000003.1::G00022Context members
DW687_RS07710DW687_RS07715
Partner locus tags
DW687_RS07710DW687_RS07715
Partner old locus tags
DW687_07705DW687_07710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242987873.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW687_RS07710Primary locus identifier stored in the genes table.
Old locus tagDW687_07705Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUSM01000003.1Sequence record reported by the local genomic context database.
Genomic interval610 725-612 146 nt1 422 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span610 725-612 810 ntGCF_003435385::NZ_QUSM01000003.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435385::NZ_QUSM01000003.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUSM01000003.1All displayed genes belong to this local TCS context.
Neighborhood span610 725-612 810 nt2 086 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
610 725 nt612 810 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW687_RS07710GCF_003435385#DW687_RS07710
HKClassicCurrent focus
610 725-612 146 nt · Reverse (-)
DW687_RS07715GCF_003435385#DW687_RS07715
RROmpR
612 130-612 810 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435385#DW687_RS07710The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1689215
Simplified PFAM architecture for HKOC_1689215
PFAM domain coverage: 173 / 473 aa (36.6%)
1 aa473 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[253-316] | HATPase_c[359-467]
- Domain count: 2
- Matched identifier: HKOC_1689215
- Positioned domains: HisKA 253-316 ; HATPase_c 359-467
Cluster members and taxonomy
Representative gene: GCF_003435385#DW687_RS07710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_003435385
AssemblyASM343538v1 · Scaffoldhaploid
Genome composition2 409 730 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 39 · HK 25 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key