1 PTS_EIIC#1
27-347 aa · 321 aa · 33.3% of protein
Raw token
PTS_EIIC:27:4.13e-27:347:330:315P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW687_RS07435
Histidine kinase, Hybrid
Anaerofustis stercorihominis · GCF_003435385
ClassHKTypeHybridLength964 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435385#DW687_RS07435Stable P2CS identifier used across views.
GenomeGCF_003435385Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
PTS_EIICHisKAHATPase_cResponse_reg
Protein length964 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage620 / 964 aa (64.3%)Merged over positioned domains only.
Domain description1 PTS_EIIC,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa964 aa
Domain-by-domain annotation4 items
2 HisKA#2
587-653 aa · 67 aa · 7.0% of protein
Raw token
HisKA:587:5.2e-18:653:67:643 HATPase_c#3
699-816 aa · 118 aa · 12.2% of protein
Raw token
HATPase_c:699:1.39e-26:816:118:1094 Response_reg#4
843-956 aa · 114 aa · 11.8% of protein
Raw token
Response_reg:843:9.8e-28:956:114:111- Raw architecture: PTS_EIIC:27:4.13e-27:347:330:315#HisKA:587:5.2e-18:653:67:64#HATPase_c:699:1.39e-26:816:118:109#Response_reg:843:9.8e-28:956:114:111
- Domain description: 1 PTS_EIIC,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435385::NZ_QUSM01000003.1::G00021
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span532062-537885Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW687_07430RefSeq proteinWP_117532268.1
Context group ID
GCF_003435385::NZ_QUSM01000003.1::G00021Context members
DW687_RS07435DW687_RS07440
Partner locus tags
DW687_RS07435DW687_RS07440
Partner old locus tags
DW687_07430DW687_07435
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117532268.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DZ68Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DZ68_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW687_RS07435Primary locus identifier stored in the genes table.
Old locus tagDW687_07430Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUSM01000003.1Sequence record reported by the local genomic context database.
Genomic interval532 062-534 956 nt2 895 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span532 062-537 885 ntGCF_003435385::NZ_QUSM01000003.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435385::NZ_QUSM01000003.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUSM01000003.1All displayed genes belong to this local TCS context.
Neighborhood span532 062-537 885 nt5 824 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
532 062 nt537 885 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW687_RS07435GCF_003435385#DW687_RS07435
HKHybridCurrent focus
532 062-534 956 nt · Reverse (-)
DW687_RS07440GCF_003435385#DW687_RS07440
HKHybrid
535 138-537 885 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435385#DW687_RS07435The current gene is the representative for this cluster.
PFAM architecturePTS_EIIC + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0315458
Simplified PFAM architecture for HKOC_0315458
PFAM domain coverage: 622 / 964 aa (64.5%)
1 aa964 aa
PTS_EIICHisKAHATPase_cResponse_reg
- Simplified architecture: PTS_EIIC + HisKA + HATPase_c + Response_reg
- Raw architecture: PTS_EIIC[27-347] | HisKA[587-653] | HATPase_c[699-816] | Response_reg[843-958]
- Domain count: 4
- Matched identifier: HKOC_0315458
- Positioned domains: PTS_EIIC 27-347 ; HisKA 587-653 ; HATPase_c 699-816 ; Response_reg 843-958
Cluster members and taxonomy
Representative gene: GCF_003435385#DW687_RS07435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_003435385
AssemblyASM343538v1 · Scaffoldhaploid
Genome composition2 409 730 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 39 · HK 25 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key