1 Response_reg#1
8-121 aa · 114 aa · 31.5% of protein
Raw token
Response_reg:8:4.33e-25:121:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW687_RS06405
Response regulator RpfG family
Anaerofustis stercorihominis · GCF_003435385
ClassRRTypeRpfGLength362 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435385#DW687_RS06405Stable P2CS identifier used across views.
GenomeGCF_003435385Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length362 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage218 / 362 aa (60.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa362 aa
Domain-by-domain annotation2 items
2 HD#2
205-308 aa · 104 aa · 28.7% of protein
Raw token
HD:205:0.000000000000492:308:104:110- Raw architecture: Response_reg:8:4.33e-25:121:115:111#HD:205:0.000000000000492:308:104:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435385::NZ_QUSM01000003.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span328614-333359Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW687_06400RefSeq proteinWP_117532117.1
Context group ID
GCF_003435385::NZ_QUSM01000003.1::G00020Context members
DW687_RS06400DW687_RS06405
Partner locus tags
DW687_RS06400DW687_RS06405
Partner old locus tags
DW687_06395DW687_06400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117532117.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DYT1Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DYT1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW687_RS06405Primary locus identifier stored in the genes table.
Old locus tagDW687_06400Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUSM01000003.1Sequence record reported by the local genomic context database.
Genomic interval332 271-333 359 nt1 089 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span328 614-333 359 ntGCF_003435385::NZ_QUSM01000003.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435385::NZ_QUSM01000003.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUSM01000003.1All displayed genes belong to this local TCS context.
Neighborhood span328 614-333 359 nt4 746 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
328 614 nt333 359 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW687_RS06400GCF_003435385#DW687_RS06400
HKHybrid
328 614-332 246 nt · Reverse (-)
DW687_RS06405GCF_003435385#DW687_RS06405
RRRpfGCurrent focus
332 271-333 359 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435385#DW687_RS06405The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_52 domains in the representative PFAM annotation.
PFAM architecture for RROC_0455566
Simplified PFAM architecture for RROC_0455566
PFAM domain coverage: 242 / 362 aa (66.9%)
1 aa362 aa
Response_regHD_5
- Simplified architecture: Response_reg + HD_5
- Raw architecture: Response_reg[8-120] | HD_5[200-328]
- Domain count: 2
- Matched identifier: RROC_0455566
- Positioned domains: Response_reg 8-120 ; Response_reg 8-120 ; HD_5 200-328 ; HD_5 200-328
Cluster members and taxonomy
Representative gene: GCF_003435385#DW687_RS06405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_003435385
AssemblyASM343538v1 · Scaffoldhaploid
Genome composition2 409 730 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 39 · HK 25 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key