Gene detail

DW687_RS06400

Histidine kinase, Hybrid

Anaerofustis stercorihominis · GCF_003435385

Open genome Open selected cluster RefSeq UniProt

ClassHKTypeHybridLength1210 aaTM0ValidatedNoCompleteYesContextpaired

Gene IDGCF_003435385#DW687_RS06400Stable P2CS identifier used across views.

GenomeGCF_003435385Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis

Selected clusterHKOC_0152866Run 6 · 1 sequences · id 100% · cov 80% · representative

External referencesWP_117532116.1 · A0A3E3DYP7 · MIST4 DW687_RS06400RefSeq · UniProt · MIST4

Domain signature

Compact overview inferred from the domain field

PAS_3HisKAHATPase_cResponse_reg

Protein length1210 aaLength used to scale native and Biotite-like views.

Annotated domains77 with usable coordinates.

Domain coverage626 / 1210 aa (51.7%)Merged over positioned domains only.

Domain description3 PAS_3,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa1210 aa

Domain-by-domain annotation7 items

1 PAS_3#1

174-249 aa · 76 aa · 6.3% of protein

Raw tokenPAS_3:174:0.00000000317:249:77:89

2 PAS_3#2

317-399 aa · 83 aa · 6.9% of protein

Raw tokenPAS_3:317:0.0000000000000458:399:83:89

3 PAS_3#3

449-533 aa · 85 aa · 7.0% of protein

Raw tokenPAS_3:449:3.3e-17:533:85:89

4 HisKA#4

700-766 aa · 67 aa · 5.5% of protein

Raw tokenHisKA:700:8.8e-18:766:67:64

5 HATPase_c#5

813-924 aa · 112 aa · 9.3% of protein

Raw tokenHATPase_c:813:2.25e-28:924:112:109

6 Response_reg#6

947-1031 aa · 85 aa · 7.0% of protein

Raw tokenResponse_reg:947:0.000000000000767:1031:85:111

7 Response_reg#7

1088-1205 aa · 118 aa · 9.8% of protein

Raw tokenResponse_reg:1088:4.28e-26:1205:118:111

Raw architecture: PAS_3:174:0.00000000317:249:77:89#PAS_3:317:0.0000000000000458:399:83:89#PAS_3:449:3.3e-17:533:85:89#HisKA:700:8.8e-18:766:67:64#HATPase_c:813:2.25e-28:924:112:109#Response_reg:947:0.000000000000767:1031:85:111#Response_reg:1088:4.28e-26:1205:118:111
Domain description: 3 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelpairedGCF_003435385::NZ_QUSM01000003.1::G00020

Group size22 locus tags listed below.

HK / RR1 / 1Counts resolved for the local TCS neighborhood.

Context span328614-333359Genomic interval covered by the local TCS group.

Identifiers

Old locus tagDW687_06395RefSeq proteinWP_117532116.1

Context group IDGCF_003435385::NZ_QUSM01000003.1::G00020

Context members

DW687_RS06400DW687_RS06405

Partner locus tags

DW687_RS06400DW687_RS06405

Partner old locus tags

DW687_06395DW687_06400

Partner protein IDs

WP_117532116.1 WP_117532117.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

RefSeqWP_117532116.1Primary protein accession used for annex mappings.

UniProt accessionA0A3E3DYP7Primary UniProt accession resolved in the annex database.

UniProt IDA0A3E3DYP7_9FIRMDisplay identifier provided by UniProt.

GO / PubMed1 / 0Unique GO terms and literature references available below.

Reference hubs

Open RefSeq Open UniProt accession

GO terms

GO:0000155

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagDW687_RS06400Primary locus identifier stored in the genes table.

Old locus tagDW687_06395Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_QUSM01000003.1Sequence record reported by the local genomic context database.

Genomic interval328 614-332 246 nt3 633 nt · Reverse (-)

StrandReverse (-)Strand sign follows the local context database convention.

Local TCS group span328 614-333 359 ntGCF_003435385::NZ_QUSM01000003.1::G00020

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_003435385::NZ_QUSM01000003.1::G00020

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelpairedNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_QUSM01000003.1All displayed genes belong to this local TCS context.

Neighborhood span328 614-333 359 nt4 746 nt

Members21 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

328 614 nt333 359 nt

+-DW687_RS06400 DW687_RS06405

Neighborhood gene cards

2 genes in the current local neighborhood.

DW687_RS06400GCF_003435385#DW687_RS06400

HKHybridCurrent focus

328 614-332 246 nt · Reverse (-)

Old locus DW687_06395RefSeq WP_117532116.1

Open current gene

DW687_RS06405GCF_003435385#DW687_RS06405

RRRpfG

332 271-333 359 nt · Reverse (-)

Old locus DW687_06400RefSeq WP_117532117.1

Open gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_0152866HK

Run 61 sequencesid 100%cov 80%

PFAM PAS_3 + PAS_3 + PAS_3 + HisKA + HATPase_c + Response_reg + Response_reg

Current gene is the representative sequence.

Selected clusterHKOC_0152866Run 6 · HK · 1 sequences

Representative sequenceGCF_003435385#DW687_RS06400The current gene is the representative for this cluster.

PFAM architecturePAS_3 + PAS_3 + PAS_3 + HisKA + HATPase_c + Response_reg + Response_reg7 domains in the representative PFAM annotation.

Open in cluster search

PFAM architecture for HKOC_0152866

Simplified PFAM architecture for HKOC_0152866

PFAM domain coverage: 652 / 1210 aa (53.9%)

1 aa1210 aa

PAS_3PAS_3PAS_3HisKAHATPase_cResponse_regResponse_reg

Simplified architecture: PAS_3 + PAS_3 + PAS_3 + HisKA + HATPase_c + Response_reg + Response_reg
Raw architecture: PAS_3[175-249] | PAS_3[318-399] | PAS_3[450-532] | HisKA[700-766] | HATPase_c[813-925] | Response_reg[947-1061] | Response_reg[1088-1204]
Domain count: 7
Matched identifier: HKOC_0152866
Positioned domains: PAS_3 175-249 ; PAS_3 318-399 ; PAS_3 450-532 ; HisKA 700-766 ; HATPase_c 813-925 ; Response_reg 947-1061 ; Response_reg 1088-1204

Cluster members and taxonomy

Representative gene: GCF_003435385#DW687_RS06400

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 214 853 · GCF_003435385

AssemblyASM343538v1 · Scaffoldhaploid

Genome composition2 409 730 bp · 34,0% GCAnaerofustis stercorihominis

Signal transduction countsGenes 39 · HK 25 · RR 13CheA 0 · PP 1

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis

Lineage path7 lineage nodes

1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis

Open genome Search genes in genome Search HK genes NCBI assembly files

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