1 HisKA#1
358-424 aa · 67 aa · 7.7% of protein
Raw token
HisKA:358:0.0000000000000152:424:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW687_RS05270
Histidine kinase, Hybrid
Anaerofustis stercorihominis · GCF_003435385
ClassHKTypeHybridLength869 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435385#DW687_RS05270Stable P2CS identifier used across views.
GenomeGCF_003435385Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length869 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage420 / 869 aa (48.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa869 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
471-588 aa · 118 aa · 13.6% of protein
Raw token
HATPase_c:471:5.83e-30:588:118:1093 Response_reg#3
605-722 aa · 118 aa · 13.6% of protein
Raw token
Response_reg:605:2.61e-27:722:118:1114 Response_reg#4
748-864 aa · 117 aa · 13.5% of protein
Raw token
Response_reg:748:5.88e-26:864:117:111- Raw architecture: HisKA:358:0.0000000000000152:424:67:64#HATPase_c:471:5.83e-30:588:118:109#Response_reg:605:2.61e-27:722:118:111#Response_reg:748:5.88e-26:864:117:111
- Domain description: 1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435385::NZ_QUSM01000003.1::G00016
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span117840-120449Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW687_05265RefSeq proteinWP_117532019.1
Context group ID
GCF_003435385::NZ_QUSM01000003.1::G00016Context members
DW687_RS05270
Partner locus tags
DW687_RS05270
Partner old locus tags
DW687_05265
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117532019.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DYL6Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DYL6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW687_RS05270Primary locus identifier stored in the genes table.
Old locus tagDW687_05265Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUSM01000003.1Sequence record reported by the local genomic context database.
Genomic interval117 840-120 449 nt2 610 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span117 840-120 449 ntGCF_003435385::NZ_QUSM01000003.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435385::NZ_QUSM01000003.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUSM01000003.1All displayed genes belong to this local TCS context.
Neighborhood span117 840-120 449 nt2 610 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
117 840 nt120 449 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW687_RS05270GCF_003435385#DW687_RS05270
HKHybridCurrent focus
117 840-120 449 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435385#DW687_RS05270The current gene is the representative for this cluster.
PFAM architecture4HB_MCP_1 + HisKA + HATPase_c + Response_reg + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0459750
Simplified PFAM architecture for HKOC_0459750
PFAM domain coverage: 574 / 869 aa (66.1%)
1 aa869 aa
4HB_MCP_1HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: 4HB_MCP_1 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: 4HB_MCP_1[18-173] | HisKA[358-424] | HATPase_c[471-587] | Response_reg[605-722] | Response_reg[748-863]
- Domain count: 5
- Matched identifier: HKOC_0459750
- Positioned domains: 4HB_MCP_1 18-173 ; HisKA 358-424 ; HATPase_c 471-587 ; Response_reg 605-722 ; Response_reg 748-863
Cluster members and taxonomy
Representative gene: GCF_003435385#DW687_RS05270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_003435385
AssemblyASM343538v1 · Scaffoldhaploid
Genome composition2 409 730 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 39 · HK 25 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key