1 PAS_3#1
305-363 aa · 59 aa · 6.4% of protein
Raw token
PAS_3:305:0.000000000374:363:59:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW687_RS05040
Histidine kinase, Hybrid
Anaerofustis stercorihominis · GCF_003435385
ClassHKTypeHybridLength928 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435385#DW687_RS05040Stable P2CS identifier used across views.
GenomeGCF_003435385Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length928 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage480 / 928 aa (51.7%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa928 aa
Domain-by-domain annotation5 items
2 HisKA#2
418-484 aa · 67 aa · 7.2% of protein
Raw token
HisKA:418:2.73e-18:484:67:643 HATPase_c#3
531-649 aa · 119 aa · 12.8% of protein
Raw token
HATPase_c:531:2.84e-31:649:119:1094 Response_reg#4
665-781 aa · 117 aa · 12.6% of protein
Raw token
Response_reg:665:4.26e-23:781:117:1115 Response_reg#5
807-924 aa · 118 aa · 12.7% of protein
Raw token
Response_reg:807:9.07e-28:924:118:111- Raw architecture: PAS_3:305:0.000000000374:363:59:89#HisKA:418:2.73e-18:484:67:64#HATPase_c:531:2.84e-31:649:119:109#Response_reg:665:4.26e-23:781:117:111#Response_reg:807:9.07e-28:924:118:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435385::NZ_QUSM01000003.1::G00015
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span54827-59574Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW687_05035RefSeq proteinWP_181965844.1
Context group ID
GCF_003435385::NZ_QUSM01000003.1::G00015Context members
DW687_RS05035DW687_RS05040
Partner locus tags
DW687_RS05035DW687_RS05040
Partner old locus tags
DW687_05030DW687_05035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_181965844.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW687_RS05040Primary locus identifier stored in the genes table.
Old locus tagDW687_05035Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUSM01000003.1Sequence record reported by the local genomic context database.
Genomic interval56 788-59 574 nt2 787 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span54 827-59 574 ntGCF_003435385::NZ_QUSM01000003.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435385::NZ_QUSM01000003.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUSM01000003.1All displayed genes belong to this local TCS context.
Neighborhood span54 827-59 574 nt4 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 827 nt59 574 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW687_RS05035GCF_003435385#DW687_RS05035
HKHybrid
54 827-56 602 nt · Forward (+)
DW687_RS05040GCF_003435385#DW687_RS05040
HKHybridCurrent focus
56 788-59 574 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435385#DW687_RS05040The current gene is the representative for this cluster.
PFAM architecturePAS_9 + PAS_3 + HisKA + HATPase_c + Response_reg + Response_reg6 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0355720
Simplified PFAM architecture for HKOC_0355720
PFAM domain coverage: 582 / 928 aa (62.7%)
1 aa928 aa
PAS_9PAS_3HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: PAS_9 + PAS_3 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: PAS_9[37-139] | PAS_3[304-365] | HisKA[418-484] | HATPase_c[532-648] | Response_reg[665-780] | Response_reg[807-923]
- Domain count: 6
- Matched identifier: HKOC_0355720
- Positioned domains: PAS_9 37-139 ; PAS_3 304-365 ; HisKA 418-484 ; HATPase_c 532-648 ; Response_reg 665-780 ; Response_reg 807-923
Cluster members and taxonomy
Representative gene: GCF_003435385#DW687_RS05040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_003435385
AssemblyASM343538v1 · Scaffoldhaploid
Genome composition2 409 730 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 39 · HK 25 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key