1 PilJ#1
37-112 aa · 76 aa · 13.2% of protein
Raw token
PilJ:37:0.0000616:112:87:112P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW687_RS04775
Histidine kinase, Hybrid
Anaerofustis stercorihominis · GCF_003435385
ClassHKTypeHybridLength576 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435385#DW687_RS04775Stable P2CS identifier used across views.
GenomeGCF_003435385Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
PilJHisKAHATPase_cResponse_reg
Protein length576 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage375 / 576 aa (65.1%)Merged over positioned domains only.
Domain description1 PilJ,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa576 aa
Domain-by-domain annotation4 items
2 HisKA#2
197-263 aa · 67 aa · 11.6% of protein
Raw token
HisKA:197:8.1e-17:263:67:643 HATPase_c#3
309-426 aa · 118 aa · 20.5% of protein
Raw token
HATPase_c:309:5.72e-29:426:118:1094 Response_reg#4
453-566 aa · 114 aa · 19.8% of protein
Raw token
Response_reg:453:5.4e-26:566:114:111- Raw architecture: PilJ:37:0.0000616:112:87:112#HisKA:197:8.1e-17:263:67:64#HATPase_c:309:5.72e-29:426:118:109#Response_reg:453:5.4e-26:566:114:111
- Domain description: 1 PilJ,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435385::NZ_QUSM01000002.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span806435-808165Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW687_04770RefSeq proteinWP_117531909.1
Context group ID
GCF_003435385::NZ_QUSM01000002.1::G00013Context members
DW687_RS04775
Partner locus tags
DW687_RS04775
Partner old locus tags
DW687_04770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117531909.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3E254Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3E254_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW687_RS04775Primary locus identifier stored in the genes table.
Old locus tagDW687_04770Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUSM01000002.1Sequence record reported by the local genomic context database.
Genomic interval806 435-808 165 nt1 731 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span806 435-808 165 ntGCF_003435385::NZ_QUSM01000002.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435385::NZ_QUSM01000002.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUSM01000002.1All displayed genes belong to this local TCS context.
Neighborhood span806 435-808 165 nt1 731 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
806 435 nt808 165 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW687_RS04775GCF_003435385#DW687_RS04775
HKHybridCurrent focus
806 435-808 165 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435385#DW687_RS04775The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1184224
Simplified PFAM architecture for HKOC_1184224
PFAM domain coverage: 297 / 576 aa (51.6%)
1 aa576 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[198-263] | HATPase_c[309-425] | Response_reg[453-566]
- Domain count: 3
- Matched identifier: HKOC_1184224
- Positioned domains: HisKA 198-263 ; HATPase_c 309-425 ; Response_reg 453-566
Cluster members and taxonomy
Representative gene: GCF_003435385#DW687_RS04775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_003435385
AssemblyASM343538v1 · Scaffoldhaploid
Genome composition2 409 730 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 39 · HK 25 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key