1 Response_reg#1
4-114 aa · 111 aa · 47.8% of protein
Raw token
Response_reg:4:8.08e-37:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW687_RS04165
Response regulator OmpR family
Anaerofustis stercorihominis · GCF_003435385
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435385#DW687_RS04165Stable P2CS identifier used across views.
GenomeGCF_003435385Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 232 aa (80.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-226 aa · 76 aa · 32.8% of protein
Raw token
Trans_reg_C:151:8.16e-33:226:77:77- Raw architecture: Response_reg:4:8.08e-37:114:111:111#Trans_reg_C:151:8.16e-33:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435385::NZ_QUSM01000002.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span681157-683278Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW687_04160RefSeq proteinWP_007049668.1
Context group ID
GCF_003435385::NZ_QUSM01000002.1::G00011Context members
DW687_RS04160DW687_RS04165
Partner locus tags
DW687_RS04160DW687_RS04165
Partner old locus tags
DW687_04155DW687_04160
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007049668.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3E1V7Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3E1V7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW687_RS04165Primary locus identifier stored in the genes table.
Old locus tagDW687_04160Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUSM01000002.1Sequence record reported by the local genomic context database.
Genomic interval682 580-683 278 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span681 157-683 278 ntGCF_003435385::NZ_QUSM01000002.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435385::NZ_QUSM01000002.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUSM01000002.1All displayed genes belong to this local TCS context.
Neighborhood span681 157-683 278 nt2 122 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
681 157 nt683 278 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW687_RS04160GCF_003435385#DW687_RS04160
HKClassic
681 157-682 596 nt · Reverse (-)
DW687_RS04165GCF_003435385#DW687_RS04165
RROmpRCurrent focus
682 580-683 278 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154825#ANASTE_RS03985Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1119703
Simplified PFAM architecture for RROC_1119703
PFAM domain coverage: 186 / 232 aa (80.2%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-114] | Trans_reg_C[152-226]
- Domain count: 2
- Matched identifier: RROC_1119703
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; Trans_reg_C 152-226 ; Trans_reg_C 152-226
Cluster members and taxonomy
Representative gene: GCF_000154825#ANASTE_RS03985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_003435385
AssemblyASM343538v1 · Scaffoldhaploid
Genome composition2 409 730 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 39 · HK 25 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key