1 PAS_3#1
183-261 aa · 79 aa · 7.4% of protein
Raw token
PAS_3:183:0.0000000000896:261:81:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW687_RS01305
Histidine kinase, Hybrid
Anaerofustis stercorihominis · GCF_003435385
ClassHKTypeHybridLength1074 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435385#DW687_RS01305Stable P2CS identifier used across views.
GenomeGCF_003435385Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length1074 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage375 / 1074 aa (34.9%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1074 aa
Domain-by-domain annotation4 items
2 HisKA#2
562-628 aa · 67 aa · 6.2% of protein
Raw token
HisKA:562:1.43e-16:628:67:643 HATPase_c#3
676-793 aa · 118 aa · 11.0% of protein
Raw token
HATPase_c:676:2.38e-27:793:118:1094 Response_reg#4
950-1060 aa · 111 aa · 10.3% of protein
Raw token
Response_reg:950:4.04e-28:1060:111:111- Raw architecture: PAS_3:183:0.0000000000896:261:81:89#HisKA:562:1.43e-16:628:67:64#HATPase_c:676:2.38e-27:793:118:109#Response_reg:950:4.04e-28:1060:111:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435385::NZ_QUSM01000002.1::G00006
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span110540-113764Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW687_01305RefSeq proteinWP_181965811.1
Context group ID
GCF_003435385::NZ_QUSM01000002.1::G00006Context members
DW687_RS01305
Partner locus tags
DW687_RS01305
Partner old locus tags
DW687_01305
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_181965811.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW687_RS01305Primary locus identifier stored in the genes table.
Old locus tagDW687_01305Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUSM01000002.1Sequence record reported by the local genomic context database.
Genomic interval110 540-113 764 nt3 225 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span110 540-113 764 ntGCF_003435385::NZ_QUSM01000002.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435385::NZ_QUSM01000002.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUSM01000002.1All displayed genes belong to this local TCS context.
Neighborhood span110 540-113 764 nt3 225 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
110 540 nt113 764 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW687_RS01305GCF_003435385#DW687_RS01305
HKHybridCurrent focus
110 540-113 764 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435385#DW687_RS01305The current gene is the representative for this cluster.
PFAM architecturePAS_3 + PAS_9 + HisKA + HATPase_c + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0244005
Simplified PFAM architecture for HKOC_0244005
PFAM domain coverage: 425 / 1074 aa (39.6%)
1 aa1074 aa
PAS_3PAS_9HisKAHATPase_cResponse_reg
- Simplified architecture: PAS_3 + PAS_9 + HisKA + HATPase_c + Response_reg
- Raw architecture: PAS_3[183-264] | PAS_9[363-407] | HisKA[562-628] | HATPase_c[676-790] | Response_reg[950-1065]
- Domain count: 5
- Matched identifier: HKOC_0244005
- Positioned domains: PAS_3 183-264 ; PAS_9 363-407 ; HisKA 562-628 ; HATPase_c 676-790 ; Response_reg 950-1065
Cluster members and taxonomy
Representative gene: GCF_003435385#DW687_RS01305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_003435385
AssemblyASM343538v1 · Scaffoldhaploid
Genome composition2 409 730 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 39 · HK 25 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key