1 Response_reg#1
4-113 aa · 110 aa · 49.8% of protein
Raw token
Response_reg:4:1.62e-24:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW687_RS00960
Response regulator OmpR family
Anaerofustis stercorihominis · GCF_003435385
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435385#DW687_RS00960Stable P2CS identifier used across views.
GenomeGCF_003435385Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 221 aa (83.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-218 aa · 74 aa · 33.5% of protein
Raw token
Trans_reg_C:145:2.01e-29:218:75:77- Raw architecture: Response_reg:4:1.62e-24:113:111:111#Trans_reg_C:145:2.01e-29:218:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435385::NZ_QUSM01000002.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span45254-46932Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW687_00960RefSeq proteinWP_117531008.1
Context group ID
GCF_003435385::NZ_QUSM01000002.1::G00003Context members
DW687_RS00960DW687_RS00965
Partner locus tags
DW687_RS00960DW687_RS00965
Partner old locus tags
DW687_00960DW687_00965
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117531008.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3E0V7Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3E0V7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW687_RS00960Primary locus identifier stored in the genes table.
Old locus tagDW687_00960Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUSM01000002.1Sequence record reported by the local genomic context database.
Genomic interval45 254-45 919 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span45 254-46 932 ntGCF_003435385::NZ_QUSM01000002.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435385::NZ_QUSM01000002.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUSM01000002.1All displayed genes belong to this local TCS context.
Neighborhood span45 254-46 932 nt1 679 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 254 nt46 932 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW687_RS00960GCF_003435385#DW687_RS00960
RROmpRCurrent focus
45 254-45 919 nt · Forward (+)
DW687_RS00965GCF_003435385#DW687_RS00965
HKClassic
45 916-46 932 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435385#DW687_RS00960The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1687448
Simplified PFAM architecture for RROC_1687448
PFAM domain coverage: 184 / 221 aa (83.3%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[146-219]
- Domain count: 2
- Matched identifier: RROC_1687448
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 146-219 ; Trans_reg_C 146-219
Cluster members and taxonomy
Representative gene: GCF_003435385#DW687_RS00960
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_003435385
AssemblyASM343538v1 · Scaffoldhaploid
Genome composition2 409 730 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 39 · HK 25 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key