1 Response_reg#1
4-116 aa · 113 aa · 40.1% of protein
Raw token
Response_reg:4:4.81e-38:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW826_RS05330
Response regulator, unclassified
Clostridium sp. AM34-11AC · GCF_003435375
ClassRRTypeunclassifiedLength282 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435375#DW826_RS05330Stable P2CS identifier used across views.
GenomeGCF_003435375Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length282 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 282 aa (68.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa282 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
189-231 aa · 43 aa · 15.2% of protein
Raw token
HTH_AraC:189:0.000000121:231:43:423 HTH_AraC#3
244-279 aa · 36 aa · 12.8% of protein
Raw token
HTH_AraC:244:0.0000108:279:36:42- Raw architecture: Response_reg:4:4.81e-38:116:113:111#HTH_AraC:189:0.000000121:231:43:42#HTH_AraC:244:0.0000108:279:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435375::NZ_QWGL01000005.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span70534-73150Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW826_05340RefSeq proteinWP_117552240.1
Context group ID
GCF_003435375::NZ_QWGL01000005.1::G00032Context members
DW826_RS05330DW826_RS05335
Partner locus tags
DW826_RS05330DW826_RS05335
Partner old locus tags
DW826_05340DW826_05345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117552240.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW826_RS05330Primary locus identifier stored in the genes table.
Old locus tagDW826_05340Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGL01000005.1Sequence record reported by the local genomic context database.
Genomic interval70 534-71 382 nt849 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span70 534-73 150 ntGCF_003435375::NZ_QWGL01000005.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435375::NZ_QWGL01000005.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGL01000005.1All displayed genes belong to this local TCS context.
Neighborhood span70 534-73 150 nt2 617 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
70 534 nt73 150 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW826_RS05330GCF_003435375#DW826_RS05330
RRunclassifiedCurrent focus
70 534-71 382 nt · Reverse (-)
DW826_RS05335GCF_003435375#DW826_RS05335
HKClassic
71 423-73 150 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435375#DW826_RS05330The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0594683
Simplified PFAM architecture for RROC_0594683
PFAM domain coverage: 192 / 282 aa (68.1%)
1 aa282 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[203-281]
- Domain count: 2
- Matched identifier: RROC_0594683
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 203-281 ; HTH_18 203-281
Cluster members and taxonomy
Representative gene: GCF_003435375#DW826_RS05330
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 242 · GCF_003435375
AssemblyASM343537v1 · Scaffoldhaploid
Genome composition3 752 211 bp · 48,0% GCClostridium sp. AM34-11AC
Signal transduction countsGenes 61 · HK 29 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key